Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K09
         (946 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.76 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 16/48 (33%), Positives = 17/48 (35%)
 Frame = +1

Query: 601 PPXKPKGXXPXPKTXXXPPQXGXTPXXPXPGXPPPQXGXPKXKTPXNP 744
           P     G  P P      PQ G +P  P P   PP  G P      NP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRG-SP--PNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = +1

Query: 580 PXXXAGXPPXKPKGXXPXPKTXXXP-PQXGXTPXXPXPGXPPPQ 708
           P   A  P   P      P+    P P  G  P  P PG PP Q
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP-PGAPPSQ 58



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 208 PPPGGGXGAXPXQ 246
           PPPGG  GA P Q
Sbjct: 46  PPPGGPPGAPPSQ 58



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +3

Query: 882 PXXXPPPGSXTPAXPXPXPS 941
           P   PPPG    A P   PS
Sbjct: 42  PSQGPPPGGPPGAPPSQNPS 61


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 670 TPXXPXPGXPPPQXGXP 720
           TP  P P  PPP    P
Sbjct: 337 TPPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.149    0.523 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,384
Number of Sequences: 438
Number of extensions: 4011
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)