Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K08
         (938 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB051559-1|BAB21863.1|  752|Homo sapiens KIAA1772 protein protein.     32   3.5  
M14268-1|AAA60694.1|  130|Homo sapiens T-cell receptor beta chai...    31   6.0  
BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        31   8.0  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        31   8.0  
AF347021-1|AAK18311.1| 1300|Homo sapiens C2H2 zinc finger protei...    31   8.0  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       31   8.0  

>AB051559-1|BAB21863.1|  752|Homo sapiens KIAA1772 protein protein.
          Length = 752

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 579 SXVAKPDRTIKIPGVSPLEA--PSCASPVPTLPLTGYLSAF-LPSGSVALL 722
           S + +P   + +P V PL    P  ++PVP  PLTG L    +P+G   ++
Sbjct: 337 SPLPQPGLVVPVPTVRPLSRTEPLLSAPVPQTPLTGILQPRPIPAGETVIV 387


>M14268-1|AAA60694.1|  130|Homo sapiens T-cell receptor beta chain
           precursor protein.
          Length = 130

 Score = 31.1 bits (67), Expect = 6.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -2

Query: 655 GEAHEG--ASRGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR-PFYGSW 494
           GE  +G   SR +T    + L    +S  SV FC    G G + + P+T     GSW
Sbjct: 72  GEVSDGYSVSRSKTEDFLLTLESATSSQTSVYFCAISGGPGGHWERPSTSGQARGSW 128


>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 698 EKGGQVSGKRQGRNRRGARGSFQGGNA 618
           EKG +VSGKR+GRN   A  S    +A
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASA 29


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 698 EKGGQVSGKRQGRNRRGARGSFQGGNA 618
           EKG +VSGKR+GRN   A  S    +A
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASA 29


>AF347021-1|AAK18311.1| 1300|Homo sapiens C2H2 zinc finger protein
           protein.
          Length = 1300

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +3

Query: 573 LKSXVAKPDRTIKIPGVSPLEAPSCASPVPTLPLTGYLSAFLPSGSVALLIATS 734
           ++S VA   R    P +SP  APS   P P+  L G  +  L +G+ A  IA S
Sbjct: 226 IRSQVALMQRPPPRPSLSPAAAPSAPGPAPS-QLPGLAALPLSAGAPAAAIAGS 278


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 698 EKGGQVSGKRQGRNRRGARGSFQGGNA 618
           EKG +VSGKR+GRN   A  S    +A
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASA 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,942,312
Number of Sequences: 237096
Number of extensions: 2278791
Number of successful extensions: 12173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12164
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12325533684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)