Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K07
         (1136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    29   1.2  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    28   2.1  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   4.8  

>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 956 MSLXYFLYITLCNRPASVHSISYD 885
           +S+ + +Y+ LCN PA V ++++D
Sbjct: 854 LSIIFDVYLNLCNEPAFVEAVAHD 877


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 962 DTMSLXYFLYITLCNRPASVHSISYDEVVFKPENAR 855
           D+ +   F+Y+     P S H  +YDE +  PEN +
Sbjct: 31  DSKNTSSFIYL---GNPISFHEYNYDETMVSPENVK 63


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 794 MNCPFLSRLSITCSMSFPXIXSTF 723
           +N PF  +L ITC  S+  + STF
Sbjct: 126 VNWPFRKKLKITCVYSYVALCSTF 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,928
Number of Sequences: 5004
Number of extensions: 40540
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 605623328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)