Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K04
         (975 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 755 PPPPPPXXXKXXXPPXGGG 699
           PPPPPP       PP G G
Sbjct: 312 PPPPPPSRRNRGKPPIGNG 330


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 764 GGXPPPPPPXXXKXXXPP 711
           GG PPPPPP       PP
Sbjct: 759 GGPPPPPPPPGVAGAGPP 776



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 767 GGGXPPPPPPXXXKXXXPP 711
           GG  PPPPPP       PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 519 PPPXXXXXXXXXXXXXPPPPPPP 451
           PPP             PPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.153    0.521 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,715
Number of Sequences: 5004
Number of extensions: 26641
Number of successful extensions: 235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)