Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_K04
(975 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 32 2.8
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 32 2.8
U34051-1|AAC50278.1| 367|Homo sapiens cyclin-dependent kinase 5... 32 2.8
DQ307839-1|ABB96255.1| 367|Homo sapiens cyclin-dependent kinase... 32 2.8
BC041771-1|AAH41771.1| 367|Homo sapiens cyclin-dependent kinase... 32 2.8
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 32 2.8
AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens ... 32 2.8
AC097468-1|AAX88916.1| 367|Homo sapiens unknown protein. 32 2.8
BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding doma... 31 4.8
AK093078-1|BAC04045.1| 710|Homo sapiens protein ( Homo sapiens ... 31 4.8
AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens ... 31 4.8
AB067474-1|BAB67780.1| 967|Homo sapiens KIAA1887 protein protein. 31 4.8
U19927-1|AAC50140.1| 502|Homo sapiens WAS protein. 31 6.4
U12707-1|AAA62663.1| 502|Homo sapiens Wiskott-Aldrich syndrome ... 31 6.4
BC012738-1|AAH12738.1| 502|Homo sapiens Wiskott-Aldrich syndrom... 31 6.4
BC002961-1|AAH02961.1| 514|Homo sapiens WAS protein protein. 31 6.4
AF115549-1|AAD26691.1| 502|Homo sapiens Wiskott-Aldrich Syndrom... 31 6.4
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 32.3 bits (70), Expect = 2.8
Identities = 26/107 (24%), Positives = 27/107 (25%), Gaps = 3/107 (2%)
Frame = -2
Query: 767 GGGXPPPPPPXXXKXXXPPXGGGGXXXXXXXXXXFXXXXXXXXXXXXXGXXTPPPPXFXG 588
G G PPPP P PP G G G PPP F G
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPG 281
Query: 587 ---GXPXXXXXXXXXXXXXXFF*KXPXPPXXXXXXXXXXXXXPPPPP 456
G P + P PP PP PP
Sbjct: 282 QPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 32.3 bits (70), Expect = 2.8
Identities = 26/107 (24%), Positives = 27/107 (25%), Gaps = 3/107 (2%)
Frame = -2
Query: 767 GGGXPPPPPPXXXKXXXPPXGGGGXXXXXXXXXXFXXXXXXXXXXXXXGXXTPPPPXFXG 588
G G PPPP P PP G G G PPP F G
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPG 281
Query: 587 ---GXPXXXXXXXXXXXXXXFF*KXPXPPXXXXXXXXXXXXXPPPPP 456
G P + P PP PP PP
Sbjct: 282 QPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328
>U34051-1|AAC50278.1| 367|Homo sapiens cyclin-dependent kinase 5
activator isoform p39i protein.
Length = 367
Score = 32.3 bits (70), Expect = 2.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 767 GGGXPPPPPPXXXKXXXPPXGG 702
GGG PPPPPP + P GG
Sbjct: 151 GGGKPPPPPPPAPQVAPPVPGG 172
>DQ307839-1|ABB96255.1| 367|Homo sapiens cyclin-dependent kinase 5,
regulatory subunit 2 (p39) protein.
Length = 367
Score = 32.3 bits (70), Expect = 2.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 767 GGGXPPPPPPXXXKXXXPPXGG 702
GGG PPPPPP + P GG
Sbjct: 151 GGGKPPPPPPPAPQVAPPVPGG 172
>BC041771-1|AAH41771.1| 367|Homo sapiens cyclin-dependent kinase 5,
regulatory subunit 2 (p39) protein.
Length = 367
Score = 32.3 bits (70), Expect = 2.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 767 GGGXPPPPPPXXXKXXXPPXGG 702
GGG PPPPPP + P GG
Sbjct: 151 GGGKPPPPPPPAPQVAPPVPGG 172
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 32.3 bits (70), Expect = 2.8
Identities = 26/107 (24%), Positives = 27/107 (25%), Gaps = 3/107 (2%)
Frame = -2
Query: 767 GGGXPPPPPPXXXKXXXPPXGGGGXXXXXXXXXXFXXXXXXXXXXXXXGXXTPPPPXFXG 588
G G PPPP P PP G G G PPP F G
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPG 281
Query: 587 ---GXPXXXXXXXXXXXXXXFF*KXPXPPXXXXXXXXXXXXXPPPPP 456
G P + P PP PP PP
Sbjct: 282 QPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328
>AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens
cDNA FLJ45135 fis, clone BRAWH3038252, highly similar
to Formin 1 isoform IV. ).
Length = 844
Score = 32.3 bits (70), Expect = 2.8
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = -1
Query: 612 PPPPXFXXGXPXXXXXXXXXXXXXXXFLKXXPPPXXXXXXXXXXXXXPPPPPPP 451
PPPP G L PPP PPPPPPP
Sbjct: 301 PPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPP 354
>AC097468-1|AAX88916.1| 367|Homo sapiens unknown protein.
Length = 367
Score = 32.3 bits (70), Expect = 2.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 767 GGGXPPPPPPXXXKXXXPPXGG 702
GGG PPPPPP + P GG
Sbjct: 151 GGGKPPPPPPPAPQVAPPVPGG 172
>BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding domain
protein 6 protein.
Length = 1003
Score = 31.5 bits (68), Expect = 4.8
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Frame = +3
Query: 696 PPSPPXGXXXFXXXXGGGGGXPPPXXXXXXXXXXXPPXXPXXXXXXS---XXXXPPPP 860
PPSP F GGGG PPP PP P S PPPP
Sbjct: 551 PPSPLLNHSLFGVLTGGGG-QPPPEPLLPPPGGPGPPLAPGEPEGPSLLVASLLPPPP 607
>AK093078-1|BAC04045.1| 710|Homo sapiens protein ( Homo sapiens
cDNA FLJ35759 fis, clone TESTI2004737. ).
Length = 710
Score = 31.5 bits (68), Expect = 4.8
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Frame = +3
Query: 696 PPSPPXGXXXFXXXXGGGGGXPPPXXXXXXXXXXXPPXXPXXXXXXS---XXXXPPPP 860
PPSP F GGGG PPP PP P S PPPP
Sbjct: 257 PPSPLLNHSLFGVLTGGGG-QPPPEPLLPPPGGPGPPLAPGEPEGPSLLVASLLPPPP 313
>AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens
cDNA FLJ31837 fis, clone NT2RP7000069, weakly similar to
MUCIN 1 PRECURSOR. ).
Length = 1003
Score = 31.5 bits (68), Expect = 4.8
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Frame = +3
Query: 696 PPSPPXGXXXFXXXXGGGGGXPPPXXXXXXXXXXXPPXXPXXXXXXS---XXXXPPPP 860
PPSP F GGGG PPP PP P S PPPP
Sbjct: 551 PPSPLLNHSLFGVLTGGGG-QPPPEPLLPPPGGPGPPLAPGEPEGPSLLVASLLPPPP 607
>AB067474-1|BAB67780.1| 967|Homo sapiens KIAA1887 protein protein.
Length = 967
Score = 31.5 bits (68), Expect = 4.8
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Frame = +3
Query: 696 PPSPPXGXXXFXXXXGGGGGXPPPXXXXXXXXXXXPPXXPXXXXXXS---XXXXPPPP 860
PPSP F GGGG PPP PP P S PPPP
Sbjct: 515 PPSPLLNHSLFGVLTGGGG-QPPPEPLLPPPGGPGPPLAPGEPEGPSLLVASLLPPPP 571
>U19927-1|AAC50140.1| 502|Homo sapiens WAS protein.
Length = 502
Score = 31.1 bits (67), Expect = 6.4
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 744 GGGGXPPPXXXXXXXXXXXPPXXPXXXXXXSXXXXPPPPXP 866
G GG PPP PP P PPPP P
Sbjct: 363 GRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPP 403
>U12707-1|AAA62663.1| 502|Homo sapiens Wiskott-Aldrich syndrome
protein protein.
Length = 502
Score = 31.1 bits (67), Expect = 6.4
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 744 GGGGXPPPXXXXXXXXXXXPPXXPXXXXXXSXXXXPPPPXP 866
G GG PPP PP P PPPP P
Sbjct: 363 GRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPP 403
>BC012738-1|AAH12738.1| 502|Homo sapiens Wiskott-Aldrich syndrome
(eczema-thrombocytopenia) protein.
Length = 502
Score = 31.1 bits (67), Expect = 6.4
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 744 GGGGXPPPXXXXXXXXXXXPPXXPXXXXXXSXXXXPPPPXP 866
G GG PPP PP P PPPP P
Sbjct: 363 GRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPP 403
>BC002961-1|AAH02961.1| 514|Homo sapiens WAS protein protein.
Length = 514
Score = 31.1 bits (67), Expect = 6.4
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 744 GGGGXPPPXXXXXXXXXXXPPXXPXXXXXXSXXXXPPPPXP 866
G GG PPP PP P PPPP P
Sbjct: 375 GRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPP 415
>AF115549-1|AAD26691.1| 502|Homo sapiens Wiskott-Aldrich Syndrome
protein protein.
Length = 502
Score = 31.1 bits (67), Expect = 6.4
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 744 GGGGXPPPXXXXXXXXXXXPPXXPXXXXXXSXXXXPPPPXP 866
G GG PPP PP P PPPP P
Sbjct: 363 GRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPP 403
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.153 0.521
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,604,676
Number of Sequences: 237096
Number of extensions: 2716083
Number of successful extensions: 32287
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15713
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12991778748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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