Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_K03
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   8.6  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   8.6  

>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 431 IETSGIQYKYFLGFL*LL--MCALNLFIIFPTVYGIEMSDSVGE 306
           I+ +G+   +F+ +L     +C L   ++FP +  +  ++ VGE
Sbjct: 79  IQYAGVDGYFFIRYLFTFGALCILGCLVLFPILLPVNATNGVGE 122


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 368 VHTLTTKGIPKNICIESLM-FRFCVSI 445
           V T++ KG P+ IC  SL  F  C+ +
Sbjct: 695 VQTVSVKGFPRRICSNSLFYFVLCMQL 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,974
Number of Sequences: 5004
Number of extensions: 66996
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)