Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_J24
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 56 9e-09
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 45 2e-05
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 44 4e-05
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 36 0.006
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 36 0.008
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 35 0.014
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 35 0.019
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 33 0.075
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.17
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 31 0.17
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.53
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 30 0.53
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 29 1.2
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 3.8
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 27 5.0
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 26 6.6
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 26 6.6
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 26 8.7
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 55.6 bits (128), Expect = 9e-09
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +2
Query: 458 KHLMRHQSATHLVCEVCGKLYRKDNLI-RHLQLHSDYLPHVCQICPYRGRFYES--LKIH 628
K+L + H E CGK Y + +L+ +HL+ HS+ P VC FY LKIH
Sbjct: 14 KNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIH 73
Query: 629 LRTHSGDKPFSC--DKCSLRF 685
R H+ KPFSC D C +F
Sbjct: 74 KRCHTNVKPFSCHYDGCDAQF 94
Score = 44.0 bits (99), Expect = 3e-05
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +2
Query: 428 KAIIRSDSYQKHLMRHQSATHLVCEV--CGK-LYRKDNLIRHLQLHSDYLPHVCQICPYR 598
K R ++HL H + VC+ C K YRK +L H + H++ P C
Sbjct: 32 KKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCD 91
Query: 599 GRFY--ESLKIHLRTHSGDKPFSC 664
+FY + L+ H+ H KP++C
Sbjct: 92 AQFYTQQHLERHIEVHRKPKPYAC 115
Score = 36.3 bits (80), Expect = 0.006
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Frame = +2
Query: 377 HVAYKEKKKLRIQCNLCKAIIRSDSYQK--HLMRHQSATHLV-CEVCGKLYRKDNLIRH- 544
HV +K + C ++ + + ++K L H H+ C +CG+ ++ +RH
Sbjct: 164 HVNRAHEKIISYSCPH-ESCVGHEGFEKWSQLQNHIREAHVPSCSICGRQFKTAAHLRHH 222
Query: 545 LQLHSDYLPH-VCQICPYRG---RFYES--LKIHLRT-HSGDKPFSCDKCSLRF 685
+ LH L CP G F S LK H+ H G+ F CD C +F
Sbjct: 223 VVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKF 276
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 44.8 bits (101), Expect = 2e-05
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Frame = +2
Query: 308 AVTADFQIDNANDEDSNQSEEMPHVAYKEKKKLRIQCNLCKAIIRSDSYQKHLMRHQSAT 487
+V D ++ + D+++S + V + + R +L + S K +S
Sbjct: 510 SVNQDTELLGKIENDNSKSNDYLSVR-NTRPRSRSLNSLVGNKSENSSSSKAKSESKSQG 568
Query: 488 HLVCEVCG---KLYRKDNLIRHLQLHSDYLPHVCQICPYRGRFYESLKIHLRTHSGDKPF 658
+ VC G + R NL H+ H++Y P C IC + H + H+G K F
Sbjct: 569 NYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAF 628
Query: 659 SCDKCSLRF 685
+C C+ RF
Sbjct: 629 ACVTCNQRF 637
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 43.6 bits (98), Expect = 4e-05
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Frame = +2
Query: 275 TAIDSDKLLHQAVTADFQIDNANDEDSNQSEEMPHVAYKEKKKLRIQCN-LCKAIIRSDS 451
T + ++L + +AD I E + S+ ++Y + K R Q +C+ I ++
Sbjct: 374 TVKEEEQLAPKIESADLSITPQVTE--HDSKPPVRISYDHRCKTRKQSTRICR--IPPET 429
Query: 452 YQKHLMRHQSATHLVC--EVCGK-LYRKDNLIRHLQLHSDYLPHVCQICPYRGRFYESLK 622
++ VC C K + RK N+ H+Q H P+ C +C + LK
Sbjct: 430 MASLYCGPEADGKYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLK 489
Query: 623 IHLRTHSGDKPFSCDKCSLRF 685
HLR H +P+ C+ C RF
Sbjct: 490 RHLRIHENGRPYVCE-CLKRF 509
Score = 37.5 bits (83), Expect = 0.003
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 413 QCNLCKA-IIRSDSYQKHLMRHQSATHLVCEVCGKLYRKDNLIRHLQ 550
+C+LCKA +R ++HL H++ VCE + R D L RH Q
Sbjct: 474 RCDLCKAGFVRHHDLKRHLRIHENGRPYVCECLKRFNRLDALNRHKQ 520
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 36.3 bits (80), Expect = 0.006
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 497 CEVCGKLY-RKDNLIRHLQLHSDYLPHVCQICPYRGRFYESLKIHLRTHSGDK 652
C+ C K + R +NL RH HS P C C + + + LK H++ DK
Sbjct: 33 CDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 35.9 bits (79), Expect = 0.008
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 572 HVCQICPYRGRFYESLKIHLRTHSGDKPFSCDK 670
+VC+ C E LK H+R+H+ +KPF+C +
Sbjct: 70 YVCETCTRAFARLEHLKRHIRSHTNEKPFTCSE 102
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 35.1 bits (77), Expect = 0.014
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 497 CEVCGK-LYRKDNLIRHLQLHSDYLPHVCQI--CPYRGRFYESLKIHLRTHS 643
C +C K YR ++ RH++ H+ PHVC C R + L H R H+
Sbjct: 28 CPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 569 PHVCQICPYRGRFYESLKIHLRTHSGDKPFSC--DKCSLRF 685
P+ C +C E H+RTH+G+KP C C+ RF
Sbjct: 25 PYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRF 65
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 34.7 bits (76), Expect = 0.019
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +2
Query: 416 CNLC-KAIIRSDSYQKHLMR-HQSATHLVCEVCGKLY-RKDNLIRHLQLHSDYLPHV 577
C C K RS+ ++H+ H S VC +CGK + R+DNL +H +LH + P +
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLHVNASPRL 480
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 32.7 bits (71), Expect = 0.075
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 413 QCNLCKAIIRSDSYQ-KHLMRHQSATHLVCEV--CGKLY-RKDNLIRHLQLH 556
+C CK + +Q +H+ H C C K + R+D LIRH++ H
Sbjct: 5 ECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +2
Query: 587 CPYRGRFY---ESLKIHLRTHSGDKPFSCD--KCSLRF 685
CP+ R + E H+R+H+G+KPF C C RF
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRF 43
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 587 CPYRGRFYES---LKIHLRTHSGDKPFSC 664
CP +G S L HLR+H+G+KPF C
Sbjct: 80 CPRKGMVQTSRFALVAHLRSHTGEKPFIC 108
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 614 SLKIHLRTHSGDKPFSCD 667
SLKIH +H+G++PF CD
Sbjct: 482 SLKIHTYSHTGERPFVCD 499
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 587 CPYRGRFYESLKIHLRTHSGDKPFSCDKCSLRF 685
CP E L+ H RTH K FSC C+ F
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAF 65
>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 221
Score = 29.9 bits (64), Expect = 0.53
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 54 RIRNHLRTLYMATISAEFALWRDINIFFLVKIPLI 158
R++++ R Y T+ A + LW + +F +PL+
Sbjct: 159 RLKSYFRKHYWPTLKANYILWPAVQLFNFTFVPLV 193
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 101 RICLMEGYQYIFSSKNTFNIQDAIKTITGI-EICETDSY 214
R+ ++ Y Y SSK T + DA++ I EICE Y
Sbjct: 46 RVRIIVLYHYYISSKTTDGMTDAVQKCRNIYEICEAFGY 84
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/78 (21%), Positives = 38/78 (48%)
Frame = +2
Query: 317 ADFQIDNANDEDSNQSEEMPHVAYKEKKKLRIQCNLCKAIIRSDSYQKHLMRHQSATHLV 496
+DF + N +S+ S E +KE+KK++IQ + + +S + L + + +
Sbjct: 318 SDFVLPNGQS-NSDLSVEQDSAIFKEQKKMKIQKRMRELETQSFADDDDLQQSIAMQRRL 376
Query: 497 CEVCGKLYRKDNLIRHLQ 550
+ K+ + +++ LQ
Sbjct: 377 AQKRAKILKPEDVAEQLQ 394
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 611 ESLKIHLRTHSGDKPFSCDKCSLRF 685
E + H R+H+ K F C CS F
Sbjct: 32 EHARRHFRSHTNSKAFICPHCSSSF 56
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +2
Query: 173 KTITGIEICETDSYPKCVCSNCFALLQGAVKFRNTAIDS 289
K ++ I + +S+ K + S CF++L ++ +NT D+
Sbjct: 227 KGVSDIILAGLESHLKNILSRCFSILNKNIRQKNTENDA 265
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 21 HYRESLRF*NGRIRNHLRTLYMATISAEFALWRDINIFFL 140
H +++ F IRNH++T++ T + ++ +N +FL
Sbjct: 335 HNVQNIYFGGSFIRNHVQTMHTLTYAIQYWSNHTMNAYFL 374
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 263 KFRNTAIDSDKLLHQAVTADFQIDNAND--EDSNQSEEMPHVAYKEKKKLR 409
K +N A +K + D +D +ND +DS S + K+KKKL+
Sbjct: 17 KSKNVASHGEKRKVKRKKEDLSMDGSNDGVKDSPDSNDDSQSKKKKKKKLK 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,985
Number of Sequences: 5004
Number of extensions: 70229
Number of successful extensions: 238
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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