Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J24
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    69   6e-14
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    51   2e-08
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    48   2e-07
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    44   1e-06
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    27   0.32 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    25   0.74 

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 68.9 bits (161), Expect = 6e-14
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
 Frame = +2

Query: 398 KKLRIQCNLC-KAIIRSDSYQKHLMRHQSATHLVCEVCGKLY-RKDNLIRHLQLHSDYLP 571
           K+   +C++C +A   S    +H+  H       C VC K + +   L+ H++ H+   P
Sbjct: 144 KERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKP 203

Query: 572 HVCQICPYRGRFYESLKIHLRTHSGDKPFSCDKCSLRF 685
           +VC+ C       + LK+H RTH+G+KP++CD C   F
Sbjct: 204 YVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSF 241



 Score = 66.9 bits (156), Expect = 2e-13
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
 Frame = +2

Query: 413 QCNLC-KAIIRSDSYQKHLMRH--QSATHLVCEVCGKLYRKD-NLIRHLQLHSDYLPHVC 580
           QC LC KA  + + YQ HL  H  +      C +CGK +     L RH + H+   P+ C
Sbjct: 63  QCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQC 122

Query: 581 QICPYRGRFYESLKIHLRTHSGDKPFSCDKCSLRF*H 691
           + C       E+L +H R H+ ++P+ CD C   F H
Sbjct: 123 EYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEH 159



 Score = 58.8 bits (136), Expect = 6e-11
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +2

Query: 413 QCNLC-KAIIRSDSYQKHLMRHQSATHLVCEVCGKLYR-KDNLIRHLQLHSDYLPHVCQI 586
           +CN+C K         +H   H       CE C K +  K+NL  H ++H+   P+ C +
Sbjct: 93  RCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDV 152

Query: 587 CPYRGRFYESLKIHLRTHSGDKPFSCDKCSLRF 685
           C         L  H+R H+G++P  C  CS  F
Sbjct: 153 CERAFEHSGKLHRHMRIHTGERPHKCTVCSKTF 185



 Score = 55.2 bits (127), Expect = 8e-10
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +2

Query: 413 QCNLC-KAIIRSDSYQKHLMRHQSATHLVCEVCGKLYRKDNLIR-HLQLHSDYLPHVCQI 586
           +C +C K  I+S     H+  H      VC+ CGK +     ++ H + H+   P+ C I
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDI 236

Query: 587 CPYRGRFYESLKIHLRTHSGDKPFSCDKCSLRF 685
           C     +   LK+H   H G+K + C  C   F
Sbjct: 237 CGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETF 269



 Score = 38.3 bits (85), Expect = 1e-04
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +2

Query: 416 CNLC-KAIIRSDSYQKHLMRHQSATHLVCEVCGKLYRKDNLIR-HLQLHSDYLPHVCQIC 589
           C  C K    S   + H   H       C++CGK +  +++++ H   H     + C +C
Sbjct: 206 CKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLC 265

Query: 590 PYRGRFYESLKIHLRTHS 643
                  +++++H++THS
Sbjct: 266 HETFGSKKTMELHIKTHS 283


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 50.8 bits (116), Expect = 2e-08
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +2

Query: 473 HQSATHLVCEVCGKLYRKDNLIR-HLQLHSDYLPHVCQICPYRGRFYESLKIHLRTHSGD 649
           H       C  C K + +D+ ++ H++LH+   P+ C  C  +     +L+ HLR H+G+
Sbjct: 4   HTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGE 63

Query: 650 KPFSCDKCSLR 682
           +P++C+ C+ +
Sbjct: 64  RPYACELCAAK 74



 Score = 39.1 bits (87), Expect = 6e-05
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 554 HSDYLPHVCQICPYRGRFYESLKIHLRTHSGDKPFSCDKCSLRF 685
           H+   P  C  C  R      LK H+R H+G+KP+ C  C  +F
Sbjct: 4   HTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQF 47



 Score = 32.7 bits (71), Expect = 0.005
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 632 RTHSGDKPFSCDKCSLRF 685
           RTH+G+KPF C +C  RF
Sbjct: 2   RTHTGEKPFECPECHKRF 19


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 47.6 bits (108), Expect = 2e-07
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 476 QSATHLVCEVCGKLYRKDNLIR-HLQLHSDYLPHVCQICPYRGRFYESLKIHLRTHSGDK 652
           Q+     C+ C K+Y     ++ H++ H+  LP  C +C         L+ H+RTH+G+K
Sbjct: 12  QAKKSFSCKYCEKVYVSLGALKMHIRTHT--LPCKCHLCGKAFSRPWLLQGHIRTHTGEK 69

Query: 653 PFSCDKCSLRF 685
           PFSC  C+  F
Sbjct: 70  PFSCQHCNRAF 80


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 461 HLMRHQSATHLVCEVCG-KLYRKDNLIRHLQLHSDYLPHVCQICPYRGRFYESLKIHLRT 637
           HL  H  +    CE C      K  L  HL+ HS+   + C  C Y  ++  SLK+HLR 
Sbjct: 7   HLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRK 66

Query: 638 HS 643
           +S
Sbjct: 67  YS 68



 Score = 36.3 bits (80), Expect = 4e-04
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 617 LKIHLRTHSGDKPFSCDKCS 676
           L+ HLR H G KPF C+KCS
Sbjct: 4   LEYHLRNHFGSKPFKCEKCS 23



 Score = 32.7 bits (71), Expect = 0.005
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 524 KDNLIRHLQLHSDYLPHVCQICPYRGRFYESLKIHLRTHSGDKPFSCDKCS 676
           K +L  HL+ H    P  C+ C Y       L  HL++HS    + C  C+
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCT 51


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 449 SYQKHLM-RH-QSATHLVCEVCGKLYR-KDNLIRHLQL 553
           S ++H   +H QS T  VCE C + YR K++L  H  L
Sbjct: 20  SLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSL 57


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 0.74
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -3

Query: 171 IASCILKVFLLEKIY*YPSIRQILQILSPCTEFEGDCEFCHFKI 40
           IA  +  VFL +K   YPSIRQ     S C      C  C + I
Sbjct: 9   IAVLLAIVFLFDKCSGYPSIRQ--GTTSYCLGCGDSCHKCKYGI 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,936
Number of Sequences: 438
Number of extensions: 4216
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)