Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J23
         (932 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...   103   2e-22
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    96   3e-20
03_05_0161 + 21400580-21401695                                         30   3.0  
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    29   4.0  
04_04_0273 - 24076664-24077701                                         29   7.0  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score =  103 bits (247), Expect = 2e-22
 Identities = 57/135 (42%), Positives = 77/135 (57%)
 Frame = +1

Query: 106 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 285
           MPF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58

Query: 286 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 465
           ++          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR 
Sbjct: 59  KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118

Query: 466 RARTAVFKSLKVKAA 510
            A       LK  AA
Sbjct: 119 GAIRQELAKLKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 50/117 (42%), Positives = 70/117 (59%)
 Frame = +1

Query: 109 PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFR 288
           PF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 289 LKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 459
           +          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 73  IDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 269 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 174
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -1

Query: 584 LVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 411
           +VA+L R F A    +          A  FK+L    + R  L      +NL  S++C
Sbjct: 322 IVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379


>04_04_0273 - 24076664-24077701
          Length = 345

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +3

Query: 66  RVHCFVLMTL*ERHAFCTVRRTRACRPGSRRSIKGKVSER--GRRY*PNSCTG*WTRQWS 239
           R++ + L+ L   H +  +    AC   + R++ G   E    R Y        W R+W+
Sbjct: 140 RMNPYALLVLYSLHVYLALELVLACAAAAVRAVMGMDLEPQFDRPYLSAHLRDFWGRRWN 199

Query: 240 T*ATDPLKPTPSHKIPPQI 296
                 L+P  SH +  ++
Sbjct: 200 LSVPAVLRPCVSHPVRARV 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,519,718
Number of Sequences: 37544
Number of extensions: 382647
Number of successful extensions: 1047
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)