Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J23
         (932 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...   104   8e-23
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    33   0.22 
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    33   0.22 
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    32   0.51 

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score =  104 bits (250), Expect = 8e-23
 Identities = 55/131 (41%), Positives = 78/131 (59%)
 Frame = +1

Query: 106 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 285
           M F R V+ GRV  +A G  +GKL ++V+VID  R  +DGP S V R    L  L LTKF
Sbjct: 1   MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60

Query: 286 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 465
            LK      T+ V+ A+  AK+ E + ++QWA+K+A +  RA++TD++R+KL  A+  RN
Sbjct: 61  VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120

Query: 466 RARTAVFKSLK 498
           R        LK
Sbjct: 121 RIVRVELAKLK 131


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +1

Query: 280 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 453
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 454 VKRNRARTAVFKSLKVKAARAGTFGKKNIP 543
           VK+ ++   + K    K A++    KK+ P
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKSP--AKKSAP 191


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +1

Query: 280 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 453
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 454 VKRNRARTAVFKSLKVKAARAGTFGKKNIP 543
           VK+ ++   + K    K A++    KK+ P
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKSP--AKKSAP 191


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 367 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 513
           E+QWA     ++ RA +T+YDR K    R+      T     L V  AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,414,944
Number of Sequences: 27780
Number of extensions: 326348
Number of successful extensions: 883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)