Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J21
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   5.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 596 RYQAFPPGKLPRALSCSDPAXYRIPVRLSPFREAWR 703
           +YQ  P      + S  DPA YRI  R+  +  +++
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYHSYK 433


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 596 RYQAFPPGKLPRALSCSDPAXYRIPVRLSPFREAWR 703
           +YQ  P      + S  DPA YRI  R+  +  +++
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYHSYK 433


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 730 DTYSVSY---EXAPRFPEGRKADRYPVXGRVGTGE 635
           +T+S+ Y   + A + P   + D Y + GR+  GE
Sbjct: 109 ETFSLLYYEFDVATKEPPPWETDSYKLIGRIAAGE 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,736
Number of Sequences: 438
Number of extensions: 5417
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)