Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J20
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    29   1.2  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   2.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   2.8  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   6.5  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   6.5  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.5  

>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
 Frame = -2

Query: 776 GXIGXQTFHWKLSIXCPIDPXYR-----ISSFIAAHXDLKP----FST*PL-PSVNTNHG 627
           G +G   FHW+ +I  P D  Y      +S         KP    F+T    P++N+N G
Sbjct: 24  GPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSN-G 82

Query: 626 TILLDII 606
           +I LDI+
Sbjct: 83  SICLDIL 89


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 101 LRDWRKALRTPITYRVGNAVRIQPQFLXFNDINGNFSAFISLL 229
           L DW++  + P   R+ +++ I  Q +    I+   SAF+S L
Sbjct: 306 LDDWKRIFKLPAEPRLLDSLLISSQIMKSTQIDEQSSAFLSKL 348


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 141 TELVMLFVYNHSSLXLMTSMGTFLLLLVFYYWWTSVQGPPVNSVD 275
           TEL+M    N  +  L++   ++ L L    WW+S++ P V  +D
Sbjct: 766 TELIMPVTQNEVTTKLVSIDDSYTLELCMAQWWSSLE-PMVLDID 809


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 59  YYYIDEEEQKMRGTLRDWRKALRTPITYRVGNAVRIQPQFLXFNDINGN 205
           ++Y++++E K      DW +   T ++   GN+V ++ Q   FN +  N
Sbjct: 8   FFYLNKKETKHS----DWVEPFTTFVSRIYGNSVDVEDQIKAFNTLREN 52


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 761 QTFHWKLSIXCPID 720
           +TFHW L+I C ID
Sbjct: 451 ETFHWYLAIICNID 464


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 499 LTSMYSHKGRGMELSELIVYDGR 567
           L SMY H+   MEL+  +V DG+
Sbjct: 228 LCSMYVHEDADMELASKLVLDGK 250


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 349 RIGIVADLDTNSKSSTKAYSFHSYLKKGHLVYNRVKNSVT 468
           +I + A+L  ++   TKAY+ H Y+ + HL + + + + T
Sbjct: 176 KIAVTANLKLSNP--TKAYTNHFYILRSHLEWTKGRKAQT 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,726
Number of Sequences: 5004
Number of extensions: 66769
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)