Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J20
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.31 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 155 AVRIQPQFLXFNDINGNFSAFISLLLL 235
           A+R+   FL  +DING F++  SLLLL
Sbjct: 530 AIRLDGNFL--SDINGVFTSIASLLLL 554


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 379 NSKSSTKAYSFHSYLKKGHLVYNRVKNSVTVTWDSQQP 492
           N++SS K  S     K G L +  V NS    W+  QP
Sbjct: 304 NTQSSAKVMS-----KNGVLFFGLVNNSAIGCWNEHQP 336


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 304 YPLTRPVIAGDYITFRIGIVADLDT-NSKSSTKAYSFHSYLKKGHLVYNRVKNSVTVTWD 480
           Y  T+P +  +Y    +      D  N++S  K  S     K G L +  + NS    W+
Sbjct: 278 YVNTKPFMKSEYGANNVQYQGVQDIFNTESIAKIMS-----KNGVLFFGLMNNSAIGCWN 332

Query: 481 SQQP 492
             QP
Sbjct: 333 EHQP 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,588
Number of Sequences: 438
Number of extensions: 4828
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)