Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J19
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   3.7  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   8.6  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    26   8.6  

>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 536 LTLDINGKGKLRGEFTGITVVAKGLAKPIQKDGVEYLQVD 655
           L LD++  GK+RG + G  V+    A  + K+  E LQ D
Sbjct: 702 LLLDVSSTGKIRGTWIGWAVIRPRKAYTM-KEADELLQTD 740


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 532 NSHPGHKWKRKTQRRIHWNNSGCEGSSQAHTKGRS 636
           NSHP +      Q   ++NNSG   +   H + R+
Sbjct: 309 NSHPSYNKYSHYQHGFNYNNSGNNRNESGHPRFRN 343


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -3

Query: 297 GNARLQNEASLXSTASKNALXXSVERCACIEERSRAXRAQKQRLXXK 157
           GN  ++   S+      N +   +E+C CI E       +KQ L  K
Sbjct: 80  GNQVIRENFSIKKRKPHNHIPQLLEQCTCIAESFEGIYTKKQILYFK 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,020
Number of Sequences: 5004
Number of extensions: 64451
Number of successful extensions: 171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)