Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J19
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0173 - 9210279-9210764,9210877-9211605,9213286-9213447           29   5.2  
01_05_0596 + 23511148-23512650                                         29   5.2  
04_04_0232 + 23794109-23794399,23795290-23796621                       28   9.0  
04_03_0573 + 17329365-17330440,17330505-17331201                       28   9.0  

>05_03_0173 - 9210279-9210764,9210877-9211605,9213286-9213447
          Length = 458

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +2

Query: 215 AQRSTEXXSAFLDAVEXNEASF*SRAFPEVNIPPLDPFHGTNVETGQDCSKSAN*KQRSN 394
           A ++T   +  LD +  N++   S A PEV I   DP H    E       S+  ++   
Sbjct: 109 AHKTTAEGNELLDMILENDSFSQSEAIPEVEIIHEDPLH-VESEPDSTAKSSSQSQEPEE 167

Query: 395 KLKHSGEVTLRIEK 436
           +  H  E+  + E+
Sbjct: 168 EEIHPLEIPFQFEE 181


>01_05_0596 + 23511148-23512650
          Length = 500

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = -3

Query: 531 LEPRTS*SAITINFGKTI--LISPVYLLFKLIFNFSILKVT-SPECFSLFDRCFQFADLE 361
           L+P T    + ++ G ++  L  P Y   +  F  +   +  SP  FSLFD C+  + L+
Sbjct: 367 LDPSTGRGGVIVDSGTSVTRLARPAYAALRDAFRAAAAGLRLSPGGFSLFDTCYDLSGLK 426


>04_04_0232 + 23794109-23794399,23795290-23796621
          Length = 540

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +1

Query: 70  PPVPTSPFHNXSSXAXSHXPAXARXCFFXFXXQSLLLGAXRPTSFLNASAA 222
           PP  + P    +  A  H P     C       S LLG  +P+   NA+ A
Sbjct: 144 PPPTSRPLAPVADTASRHGPLSLAVCSVHAQRWSRLLGLRQPSGLANATGA 194


>04_03_0573 + 17329365-17330440,17330505-17331201
          Length = 590

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
 Frame = -3

Query: 780 RMSRTTPGLELKNDAADAAASGLSVSSKPIWALLTLTRVKILST*RYSTPSFCMGLA-RP 604
           R+     G+ +++   +AAA+GL++   P W+ LT+  V  L+T  + +  +  G A   
Sbjct: 131 RLMTVESGMVMRDLIREAAAAGLALPHSPYWSGLTIGGV--LATGAHGSSLWGKGSAVHE 188

Query: 603 FATTV-IPVNSPLSFPFPFMSRVRILEPRTS*SAITINFGKTILISPVYLLFKLIFNFSI 427
           +   + I   +P S  F  +  +   +P     A  ++ G    IS V L  + +F  S+
Sbjct: 189 YVVGMRIVTPAPASEGFAAVRELAAGDPDL--DAAKVSLGVLGAISQVTLELQPLFKRSV 246

Query: 426 LKVT 415
             VT
Sbjct: 247 AFVT 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,278,316
Number of Sequences: 37544
Number of extensions: 454783
Number of successful extensions: 1108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)