Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J19
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024765-5|AAF60527.3|  975|Caenorhabditis elegans Hypothetical ...    31   1.5  
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (...    29   4.7  
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z81492-1|CAB04025.2|  326|Caenorhabditis elegans Hypothetical pr...    26   7.3  

>AC024765-5|AAF60527.3|  975|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.3 protein.
          Length = 975

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 636 TPSFCMGLARPFATT-VIPVNSPLSFPFPFMSRV 538
           TPS    L+ P ATT +IP+N PLS   P +S +
Sbjct: 729 TPSLGRELSTPLATTPLIPMNFPLSSALPVISAI 762


>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 5
           protein.
          Length = 1434

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 305 NIPPLDPFHGTNVETGQDCSKSAN*KQRSNKLKHSGEVTLRIEKLKINLNNKYT 466
           N PPL  +   ++ETG    + A    R+N+ +H        E+ K+    +Y+
Sbjct: 268 NSPPLHHYSAVHLETGLSPLEEAQRALRANRARHKPSNVSLAEEAKLAARQRYS 321


>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.4 protein.
          Length = 1393

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 305 NIPPLDPFHGTNVETGQDCSKSAN*KQRSNKLKHSGEVTLRIEKLKINLNNKYT 466
           N PPL  +   ++ETG    + A    R+N+ +H        E+ K+    +Y+
Sbjct: 268 NSPPLHHYSAVHLETGLSPLEEAQRALRANRARHKPSNVSLAEEAKLAARQRYS 321


>Z81492-1|CAB04025.2|  326|Caenorhabditis elegans Hypothetical
           protein E03H4.2 protein.
          Length = 326

 Score = 25.8 bits (54), Expect(2) = 7.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 720 WLPHRLRHSSTRVLESFWTSLILNKXXKC 806
           W P  +RH + R L ++ ++ I +   KC
Sbjct: 50  WTPREVRHDTARNLSAYKSTPIFDAYYKC 78



 Score = 21.0 bits (42), Expect(2) = 7.3
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +3

Query: 633 ELNIFRWT 656
           ELN+F+WT
Sbjct: 44  ELNVFKWT 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,238,639
Number of Sequences: 27780
Number of extensions: 371140
Number of successful extensions: 920
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)