Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J16
         (924 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0103 - 18137176-18137283,18137375-18137440,18137592-181378...   109   2e-24
12_01_0596 + 4867388-4867405,4869095-4869151,4869624-4869701,487...    31   1.3  

>01_05_0103 -
           18137176-18137283,18137375-18137440,18137592-18137828,
           18137914-18138159,18138483-18138686,18138781-18138852
          Length = 310

 Score =  109 bits (263), Expect = 2e-24
 Identities = 70/201 (34%), Positives = 110/201 (54%), Gaps = 6/201 (2%)
 Frame = +2

Query: 284 IKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYLSRK 463
           I+ P +++ K+ LL   PK +E  K+++ L G   S     +L D++ LK+ +A   S+K
Sbjct: 5   IRVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKK 64

Query: 464 NDFV-PFEDS--SLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTFDYGILDMIELGAEE 634
           ND + PFE    + +E    K + +L   GSHSKKRP+N+VLGRT+D+ I D++E+G E 
Sbjct: 65  NDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSKKRPNNLVLGRTYDHHIYDLVEVGVEN 124

Query: 635 YKAMSEFHNIKVLA---GSKPCLLFNGPAWELNQDLND*SHCSLISFTEKKVKPLXCRDX 805
           YK++  +   K LA   GSKP   F G  +E  ++L       L  F  + V+ L     
Sbjct: 125 YKSIESYVYDKKLAPKLGSKPFFAFIGEHFESVEELKHLKEVLLDLFKGEVVENL----- 179

Query: 806 NMSSVSRLLMMA*STSXRTXY 868
           N++ V R+ +   + S  T Y
Sbjct: 180 NLAGVDRVFVCT-AISPTTVY 199


>12_01_0596 +
           4867388-4867405,4869095-4869151,4869624-4869701,
           4870467-4870549,4870775-4870874,4871384-4871659,
           4872198-4872258,4872365-4872465
          Length = 257

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 635 YKAMSEFHNIKVLAGSKPCLLF-NGPAWELNQDLN 736
           YKA+   ++ ++L+GS+P  +F    AW + +DLN
Sbjct: 73  YKALERTYHYRLLSGSEPLSVFEKTSAWHIPEDLN 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,062,155
Number of Sequences: 37544
Number of extensions: 418091
Number of successful extensions: 894
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)