Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J16
         (924 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ182013-1|ABA56305.1|   75|Anopheles gambiae G(alpha)c protein.       25   3.2  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   7.5  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   7.5  

>DQ182013-1|ABA56305.1|   75|Anopheles gambiae G(alpha)c protein.
          Length = 75

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 183 YIDEFGQTTTRMQ*KKCFICEICDAIAFI 97
           ++D  GQ T R +  KCF C +   +  +
Sbjct: 13  FVDVGGQRTQRQKWTKCFDCSVTSILFLV 41


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 413 KDIYDLKKPDAAYLSRKNDFVPFEDSSLIEKLCYKKEAA 529
           K+ Y+LKK    Y S +ND    E +       YK+E A
Sbjct: 453 KNFYELKKKKDHYQSLRNDIWKKETAVTQTLSGYKEELA 491


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 594 IMEYWI*LNLVLKNIRQCQNFTI*KSWLVLNHVYCLMDLLGS 719
           ++E++  LNLVL N+  C  F       +++  +C   L  S
Sbjct: 140 VLEHFSRLNLVLVNVGFCPTFVRNSRTSIIDLTFCSPALASS 181


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,597
Number of Sequences: 2352
Number of extensions: 17106
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100468593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)