Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J16
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical ...   120   2e-27
Z81089-1|CAB03135.2|  957|Caenorhabditis elegans Hypothetical pr...    32   0.67 
AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical...    29   3.6  
U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical...    29   4.7  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    29   4.7  
AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical...    29   4.7  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    29   4.7  
Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical p...    28   8.2  
Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protei...    28   8.2  

>AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54E10A.10 protein.
          Length = 297

 Score =  120 bits (288), Expect = 2e-27
 Identities = 56/151 (37%), Positives = 94/151 (62%)
 Frame = +2

Query: 281 RIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYLSR 460
           R++K  T+KGK+VL+++  K +E  K+++F +G   +E     + D++D+KKP    + +
Sbjct: 3   RVEKIKTKKGKRVLVNRASKTVENDKKALFCRGAKTNEIISHAMMDLFDMKKPLTTKMDK 62

Query: 461 KNDFVPFEDSSLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTFDYGILDMIELGAEEYK 640
            N +  FED + I +   K + +LF +GS+SKK+P+ +  GRT+D  +LDM EL    YK
Sbjct: 63  HNPYHLFEDETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELRITSYK 122

Query: 641 AMSEFHNIKVLAGSKPCLLFNGPAWELNQDL 733
           + S F   K+  GSKPC++  G A+E + D+
Sbjct: 123 SSSNFEAAKMTLGSKPCVILEGAAFESDGDM 153



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +1

Query: 733 KRLKSLFSDFFHREKGETIXLQGLXHVLSFTATDDGLIYFXSYXISLKKVA 885
           KR+ +L  D+F   K +T+ L+GL  V+ FTA D+  +    Y   LKK A
Sbjct: 154 KRIGNLMVDWFRGPKVDTVRLEGLETVIVFTALDETNLALRVYRPMLKKSA 204


>Z81089-1|CAB03135.2|  957|Caenorhabditis elegans Hypothetical
           protein F53H4.1 protein.
          Length = 957

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
 Frame = +2

Query: 320 LLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYLSRKNDFVPFEDSSLI 499
           L   +PK +EG +  ++L G    E ++K  +D  + K   AA    KN    FED  L+
Sbjct: 687 LFRLKPKGLEGSEIGVYLDGEIAREGSKKQKRDKVEKK---AAKKRMKNKLAGFEDKKLL 743

Query: 500 ------EKLCYKKEAALFGVGSHSKKRPHNIVLGRTFD 595
                 +KL   +E ++    S S  R   + + ++ D
Sbjct: 744 LSLFDDDKLVAMREHSISLQNSSSMNRIEKMKMRKSID 781


>AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical
           protein Y47G6A.3 protein.
          Length = 181

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 353 PKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYLSRKNDFVPFEDSSLIEKLCYKKE 523
           PK  + L    P  R   +L DI+ L K  +A     ND +P +    I+++  KKE
Sbjct: 74  PKLKMSLSRTIP--RGTSMLDDIWKLLKEPSALFDNANDLLPGQKEERIDRMNEKKE 128


>U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical
           protein K03C7.1 protein.
          Length = 867

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 287 KKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSE 394
           KKPT +   K L  +EPKP E PK +   + + P E
Sbjct: 320 KKPTDKPKPKDLPKEEPKPAEPPKPAAPKKWKPPWE 355


>AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17d protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 491 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 610
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 114 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 155


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 491 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 610
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 507 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 548


>AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17b protein.
          Length = 627

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 491 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 610
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 292 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 333


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 491 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 610
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 431 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 472


>Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 275 LQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLK 415
           L R+++   R  KKV +   P PI  P     +   NP   T K  K
Sbjct: 43  LGRVRRSERRMAKKVPMMATPPPIPPPMTPTHIAIHNPKNSTSKRWK 89


>Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 275 LQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLK 415
           L R+++   R  KKV +   P PI  P     +   NP   T K  K
Sbjct: 43  LGRVRRSERRMAKKVPMMATPPPIPPPMTPTHIAIHNPKNSTSKRWK 89


>U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protein
           111 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 605 IFHNQKFYPKQCCGGASCCVNQHQTELPLFCNITSQSNYC 486
           +F N K +  +     S  V Q +++LP  CN  SQ N C
Sbjct: 61  VFLNDKKFKSELLVSNSATVRQKRSDLPAHCNCLSQ-NQC 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,826,433
Number of Sequences: 27780
Number of extensions: 395412
Number of successful extensions: 898
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)