Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J14
         (955 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.76 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   9.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 274 HHRSFSTPCIFQKSILPNEISTGTTFL 194
           H+R+ +T  +F+K+ L  + S+GTT L
Sbjct: 712 HNRNVTTCNMFRKTNLSGDSSSGTTLL 738


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -1

Query: 241  QKSILPNEISTGTTFLRI*YKTNAQSQNYDNEITNYAQSEWKQR*NSKLHFTRQWLNG 68
            Q   + +E S+ + +    YK++  S N D + T Y   +  ++   K      WL G
Sbjct: 945  QNDYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRKEPPWLEG 1002


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 238 SGKYKVSKKIGGGSFGDI 291
           +G   +   IGGG FGD+
Sbjct: 630 AGYITIEAIIGGGEFGDV 647


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 4/12 (33%), Positives = 8/12 (66%)
 Frame = +3

Query: 240 WKIQGVEKDRWW 275
           W +  +++ RWW
Sbjct: 35  WVVNNIKRKRWW 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,405
Number of Sequences: 438
Number of extensions: 5861
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)