Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J12
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           31   1.3  
12_02_1188 + 26801833-26802225                                         29   5.2  
07_01_1201 - 11419851-11419913,11420090-11420311                       29   5.2  
08_02_0514 + 18021365-18022527,18023489-18023660                       28   9.0  
01_01_0684 + 5255634-5256029,5256222-5256326                           28   9.0  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 762 GGQVSGKRQXRNRRAHEGAFQGETPG 685
           GG+V+G+   R+RR   GA++GE  G
Sbjct: 249 GGEVNGEEAARSRRRRRGAWEGEEEG 274


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 771 GEKGGQVSGKRQXRNRRAHEGAFQGETPGIFIVLSG 664
           G  GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 30  GGGGGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +3

Query: 609 LRPPDEHHKNRRSSXRWRN--PTGL*RYQAFPPGKLPRALSCSXPAAYRIPVR-LSPLRE 779
           L PP           +WR+  PTG   + +FP G LP A     PA  R P   L P R 
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRV 72

Query: 780 A 782
           A
Sbjct: 73  A 73


>08_02_0514 + 18021365-18022527,18023489-18023660
          Length = 444

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 628 ITKID--AQVXGGE-TRQDYKDTRRFPLESSLVRSPVP 732
           ITKID  A V GG+ T Q     RR PL + +  SP+P
Sbjct: 396 ITKIDPAASVVGGKLTWQTAARPRRLPLSAKITFSPLP 433


>01_01_0684 + 5255634-5256029,5256222-5256326
          Length = 166

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 822 EXRXLQXEL*ESATLPEGEKGGQVSGKRQXRNRRAHEGAFQGETPG 685
           E   L  +    A + EGE+GG+   KR+   RR  +GA   +  G
Sbjct: 36  EAHQLPEQAEAGAGVAEGEEGGRERRKRRKARRRQRKGAGDDDAAG 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,973,074
Number of Sequences: 37544
Number of extensions: 296282
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)