Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J09
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.9  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    27   5.1  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   6.8  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    26   9.0  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 356 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDV 523
           EE  ED   G    + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 220 EETNEDDLLGQS-PTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 528 APESTRSSKRTLLRGRESVPPIHEHPAAQ 614
           AP++T SS   L + ++S+P  +EH  A+
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEHQRAR 156


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 547 PVKGLYSEVGSRCRRFTNIP 606
           P+ GL+  VGSR R+ + IP
Sbjct: 114 PLSGLHQNVGSRTRKSSGIP 133


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 146 INFIDLRERFLIRLFLAPAKTRMNSLLWS 60
           ++FID RER ++  F  P +T  N   WS
Sbjct: 135 LSFIDARERRIMETFQQPCET--NECCWS 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,494
Number of Sequences: 5004
Number of extensions: 51785
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)