Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_J04
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 32 0.49
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 32 0.49
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 30 2.6
01_03_0005 + 11568545-11569119,11569179-11569191 29 3.5
09_03_0145 - 12749288-12751510 29 4.6
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 29 4.6
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 4.6
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.6
07_01_0080 + 587674-588510 28 8.0
03_01_0415 + 3191392-3191952 28 8.0
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 32.3 bits (70), Expect = 0.49
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 623 PPPPPXKXGGXPPP 664
PPPPP K GG PPP
Sbjct: 626 PPPPPGKPGGPPPP 639
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 32.3 bits (70), Expect = 0.49
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 623 PPPPPXKXGGXPPP 664
PPPPP K GG PPP
Sbjct: 931 PPPPPGKPGGPPPP 944
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 611 KKKXPPPPPXKXGGXPPP 664
KK+ PPPPP K PPP
Sbjct: 226 KKEPPPPPPPKQEPCPPP 243
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -2
Query: 650 PPXFXGGGGGXFFXFFXKRRGXXXXXXPPPPXQXXXGXXXXGGGXFFXP 504
PP + GGGG G PPPP G GGG + P
Sbjct: 72 PPSYPSGGGGG------GGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYP 114
>09_03_0145 - 12749288-12751510
Length = 740
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 590 PFFXXKXKKKXPPPPPXKXGGXPPP 664
P F K PPPPP G PPP
Sbjct: 19 PPFKPKPTNPSPPPPPPPPGIQPPP 43
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/48 (29%), Positives = 17/48 (35%)
Frame = +3
Query: 522 PPXXXXXXXXLGGGGGXXXXXXXPSFXKKXKKXXPPPPXKXXGGXPPP 665
PP GGGG P ++ PPP + G PPP
Sbjct: 3 PPPPPPQAGVAGGGGAPPQWGAIPPPVPHQQQQYAPPPPQMWGQAPPP 50
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 663 GGGXPPXFXGGGGG 622
GGG PP + GGGGG
Sbjct: 64 GGGGPPYYGGGGGG 77
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 611 KKKXPPPPPXKXGGXPPP 664
KK PPPPP K G PP
Sbjct: 373 KKGGPPPPPPKGGASRPP 390
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 623 PPPPPXKXGGXPPP 664
PPPP K GG PPP
Sbjct: 367 PPPPGGKKGGPPPP 380
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 617 KXPPPPPXKXGGXPPP 664
K PPPPP G PPP
Sbjct: 342 KGPPPPPPAKGPPPPP 357
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 617 KXPPPPPXKXGGXPPP 664
K PPPPP G PPP
Sbjct: 351 KGPPPPPPPKGPSPPP 366
>07_01_0080 + 587674-588510
Length = 278
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 611 KKKXPPPPPXKXGGXPPP 664
++ PPPPP G PPP
Sbjct: 89 RRPPPPPPPPPSSGSPPP 106
>03_01_0415 + 3191392-3191952
Length = 186
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 211 WGXKKFSKNPPPHFLXXXKFCXFPKTPPQILVPP 312
W FS +PPP L KF K + +PP
Sbjct: 101 WAGPAFSNSPPPSSLPIPKFSLHQKRSVSLELPP 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,992
Number of Sequences: 37544
Number of extensions: 464463
Number of successful extensions: 2364
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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