Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_J04
(834 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 2.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 4.1
U29380-1|AAA68740.1| 346|Caenorhabditis elegans Hypothetical pr... 29 4.1
AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical ... 28 7.2
AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical ... 28 7.2
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 28 9.5
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 28 9.5
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 623 PPPPPXKXGGXPPP 664
PPPPP GG PPP
Sbjct: 758 PPPPPPPPGGCPPP 771
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 566 GGXXPXXXPFFXXKXKKKXPPPPPXKXGGXPPP 664
GG P P PPPPP G PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 623 PPPPPXKXGGXPPP 664
PPPPP GG PPP
Sbjct: 758 PPPPPPPPGGCPPP 771
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 566 GGXXPXXXPFFXXKXKKKXPPPPPXKXGGXPPP 664
GG P P PPPPP G PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 623 PPPPPXKXGGXPPP 664
PPPPP GG PPP
Sbjct: 341 PPPPPPPPGGCPPP 354
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 566 GGXXPXXXPFFXXKXKKKXPPPPPXKXGGXPPP 664
GG P P PPPPP G PPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 623 PPPPPXKXGGXPPP 664
PPPPP GG PPP
Sbjct: 579 PPPPPPMLGGPPPP 592
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 623 PPPPPXKXGGXPPP 664
PPPPP GG PPP
Sbjct: 84 PPPPPMFAGGIPPP 97
>U29380-1|AAA68740.1| 346|Caenorhabditis elegans Hypothetical
protein ZK546.7 protein.
Length = 346
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 590 PFFXXKXKKKXPPPPPXKXGGXPPP 664
P+ + K PPPPP G PPP
Sbjct: 139 PYCECENCPKLPPPPPIPPPGPPPP 163
>AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.2 protein.
Length = 381
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 617 KXPPPPPXKXGGXPPP 664
K PPPPP G PPP
Sbjct: 183 KPPPPPPIPPPGPPPP 198
>AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.3 protein.
Length = 381
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 617 KXPPPPPXKXGGXPPP 664
K PPPPP G PPP
Sbjct: 183 KPPPPPPIPPPGPPPP 198
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 578 PXXXPFFXXKXKKKXPPPPPXKXG-GXPPP 664
P FF + PPPPP G G PPP
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPP 319
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 578 PXXXPFFXXKXKKKXPPPPPXKXG-GXPPP 664
P FF + PPPPP G G PPP
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPP 319
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,209,484
Number of Sequences: 27780
Number of extensions: 247369
Number of successful extensions: 1100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -