Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_J02
         (1143 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5C113 Cluster: SJCHGC03128 protein; n=4; Eukaryota|Rep...    39   0.28 
UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma j...    36   1.5  

>UniRef50_Q5C113 Cluster: SJCHGC03128 protein; n=4; Eukaryota|Rep:
           SJCHGC03128 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 145

 Score = 38.7 bits (86), Expect = 0.28
 Identities = 22/68 (32%), Positives = 23/68 (33%)
 Frame = -2

Query: 728 PPPPPPGGGXXXXXXPXXXFXXXXKXXXXXPPPXFXXXXGGGGGGXXXXXXXXXXGGGXK 549
           PPPP  G        P        K     PPP       GGGGG          GGG  
Sbjct: 65  PPPPRGGPPPWGGANPPPGGGKKGKNGGKPPPPKGGGGPPGGGGGLSFFKKKKGRGGGGA 124

Query: 548 KKKXXXPP 525
           +KK   PP
Sbjct: 125 QKKKRGPP 132


>UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC03138 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 156

 Score = 36.3 bits (80), Expect = 1.5
 Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
 Frame = +2

Query: 557 PPPXXXXXXXXXXPPPPPPXXXXXXGGGXXXXFFXXXKXXXXG--XXXXXXPPXGGGG 724
           PPP          PPPPP       GGG    FF        G        PP GGGG
Sbjct: 35  PPPPPFFFNKKKRPPPPPGGPPPPFGGGGFPPFFHFFPPPGGGVAPPQGGGPPLGGGG 92


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,562,673
Number of Sequences: 1657284
Number of extensions: 9899610
Number of successful extensions: 93572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55738
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 113033143954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)