Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I23
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    77   5e-15
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    75   1e-14
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.076
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    26   8.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 76.6 bits (180), Expect = 5e-15
 Identities = 40/66 (60%), Positives = 43/66 (65%)
 Frame = +3

Query: 282 KKLVLAARAVVTIEKPADVFVISSRAFGQRAVLXFAGPTGATPIXGRFKPXGFNNXIQLX 461
           +KLVLAAR + TIE PADV VISSR +G RAVL FA  TGAT I GRF P  F N I   
Sbjct: 59  EKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRT 118

Query: 462 SXNPFL 479
              P L
Sbjct: 119 YREPRL 124



 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 24/48 (50%), Positives = 38/48 (79%)
 Frame = +2

Query: 143 STRKNVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 286
           +T  ++  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEK
Sbjct: 13  ATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEK 60


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 38/66 (57%), Positives = 43/66 (65%)
 Frame = +3

Query: 282 KKLVLAARAVVTIEKPADVFVISSRAFGQRAVLXFAGPTGATPIXGRFKPXGFNNXIQLX 461
           +KLVLAAR + TIE PADV V+S+R +G RAVL FA  TGAT I GRF P  F N I   
Sbjct: 58  EKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRT 117

Query: 462 SXNPFL 479
              P L
Sbjct: 118 YREPRL 123



 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 22/48 (45%), Positives = 39/48 (81%)
 Frame = +2

Query: 143 STRKNVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 286
           +T +++ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEK
Sbjct: 12  ATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEK 59


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 20/52 (38%), Positives = 22/52 (42%)
 Frame = -3

Query: 895 GGGXFLPPKTPGGXXFYSLFLGRGKNFLGLXGTXXXPRGXXXTPXXFXRGPG 740
           GGG   PP  PGG   +  F G G +  G  G    P G    P  F  GPG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 317 GYDSTSSQNKFFPRYDAS*SHGYH 246
           GYD   S NKF P +  +  H YH
Sbjct: 232 GYDFPWSLNKFLPIWAGADHHDYH 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,212
Number of Sequences: 5004
Number of extensions: 50660
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)