Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I23
         (933 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    67   2e-11
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    66   5e-11
01_06_0751 + 31690411-31690443,31692900-31694240                       31   1.3  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 31/56 (55%), Positives = 40/56 (71%)
 Frame = +2

Query: 119 GRIRTCSPSTRKNVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 286
           G  R  S +  ++V  MLAA  HLG +N +FQME YVYKRR+DG ++INL +TWEK
Sbjct: 7   GAARALSQA-EQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEK 61



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 34/66 (51%), Positives = 40/66 (60%)
 Frame = +3

Query: 282 KKLVLAARAVVTIEKPADVFVISSRAFGQRAVLXFAGPTGATPIXGRFKPXGFNNXIQLX 461
           +KL LAAR +V IE P D+ V S+R +GQRAVL FA  TGA  I GR  P  F N +Q  
Sbjct: 60  EKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTS 119

Query: 462 SXNPFL 479
              P L
Sbjct: 120 FSEPRL 125


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 65.7 bits (153), Expect = 5e-11
 Identities = 27/45 (60%), Positives = 35/45 (77%)
 Frame = +2

Query: 152 KNVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 286
           +++  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK
Sbjct: 17  QDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEK 61



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 34/66 (51%), Positives = 40/66 (60%)
 Frame = +3

Query: 282 KKLVLAARAVVTIEKPADVFVISSRAFGQRAVLXFAGPTGATPIXGRFKPXGFNNXIQLX 461
           +KL LAAR +V IE P D+ V S+R +GQRAVL FA  TGA  I GR  P  F N +Q  
Sbjct: 60  EKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTS 119

Query: 462 SXNPFL 479
              P L
Sbjct: 120 FSEPRL 125


>01_06_0751 + 31690411-31690443,31692900-31694240
          Length = 457

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = -3

Query: 418 PXIGVAPVGPAXFSTAR*PKARDEMTNTSAGF------SMVTTARAARTSFFPGTTQVDH 257
           P    AP  PA  ST + P+A ++ T+TS GF      +M + A AA  SF P +   D 
Sbjct: 199 PDRAEAPPPPAAASTEQ-PEATEQATSTSYGFGNTTGGTMTSAASAAAGSFLPHSLGADR 257

Query: 256 M 254
           +
Sbjct: 258 V 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,380,638
Number of Sequences: 37544
Number of extensions: 403367
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)