Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_I21
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 88 2e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 85 1e-17
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 81 3e-16
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 80 5e-16
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 80 5e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 79 9e-16
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 79 1e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 74 2e-14
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 72 1e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 72 1e-13
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 71 2e-13
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 66 9e-12
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 65 1e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 63 5e-11
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 63 6e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 60 4e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 60 6e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 56 7e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 54 4e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 52 1e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 48 1e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 42 1e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 35 0.014
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.9
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 8.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 8.5
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 8.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 8.5
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 87.8 bits (208), Expect = 2e-18
Identities = 41/112 (36%), Positives = 67/112 (59%)
Frame = +2
Query: 407 TFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQ 586
++ GL + V+ LG+ PT+IQ +A+PAI +G + + A+TG GKT+A+L P+ +
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 587 HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGG 742
HI + +P E P+A+++TP RELA+QI + + +NI GG
Sbjct: 479 HIKDQRPLKTGE--GPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGG 528
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 85.4 bits (202), Expect = 1e-17
Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Frame = +2
Query: 368 NANKKEETPVYRKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETG 547
N N + KTF+++G+ D L + + LGF PT IQ +A+P +LN + + A+TG
Sbjct: 34 NNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTG 93
Query: 548 CGKTLAYLXPIIQHILEWKPTIQEEFNSP-LAVVITPNRELALQIGEVAQTIAQSININV 724
GKT A+ P+IQ + W SP AVV+ P RELA QI E + I SI +
Sbjct: 94 SGKTAAFALPVIQEL--WNNP------SPFFAVVLAPTRELAYQISEQFEAIGGSIGVRS 145
Query: 725 TTLIGG 742
++GG
Sbjct: 146 VVIVGG 151
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 80.6 bits (190), Expect = 3e-16
Identities = 39/111 (35%), Positives = 67/111 (60%)
Frame = +2
Query: 410 FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQH 589
F+ +GL L++ + GF PT IQ K +P +L G + V A TG GKT A++ P+I+H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 590 ILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGG 742
+ K T+ ++ A++++PNRELALQ +V + ++ ++ ++GG
Sbjct: 131 L---KSTLAN--SNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGG 176
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 79.8 bits (188), Expect = 5e-16
Identities = 43/117 (36%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Frame = +2
Query: 410 FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQ- 586
F D+ L +N+ K +K++GF T IQ +++P +L G + + A+TG GKTLA+L P I+
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 587 -HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGGKRKK 754
+ L++KP N ++I+P RELALQI VA+ + + + +IGG ++
Sbjct: 151 LYALKFKPR-----NGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRR 202
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 79.8 bits (188), Expect = 5e-16
Identities = 44/112 (39%), Positives = 64/112 (57%)
Frame = +2
Query: 407 TFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQ 586
TFE+ G + ++K VK LGF PT IQ +A P ++G + V + TG GKTL+Y P I
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 587 HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGG 742
HI +P + + P+ +V+ P RELA+QI + +S I T + GG
Sbjct: 183 HI-NAQPLLSPG-DGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGG 232
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 79.0 bits (186), Expect = 9e-16
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Frame = +2
Query: 377 KKEETPVYRKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGK 556
K ++ P + +E+ GL ++KV+K + + P++IQ A+P +L + + AETG GK
Sbjct: 240 KGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGK 299
Query: 557 TLAYLXPIIQHILEWKPTIQEEFN-SPLAVVITPNRELALQIGEVAQTIAQSININVTTL 733
T A++ P+I I + P + + P AVV+ P RELA QI A+ + ++
Sbjct: 300 TAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSV 359
Query: 734 IGG 742
+GG
Sbjct: 360 VGG 362
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 78.6 bits (185), Expect = 1e-15
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 1/157 (0%)
Frame = +2
Query: 338 SKGDYFIIHGNANKKEETPVYRKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNG 517
+K + F G+ K T + +F+ + L ++K + +LGF +PT IQ K +P L G
Sbjct: 238 AKKNAFFAEGDKEKSMMTTTH-SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLG 296
Query: 518 HNTVITAETGCGKTLAYLXPIIQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQT 697
+ V A TG GKT A++ PI++ +L ++P ++ + +++ P RELA+Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLL-YRP---KKVPTTRVLILCPTRELAMQCHSVATK 352
Query: 698 IAQSININVTTLIGG-KRKKNVXXLQLSP*XXITTLG 805
IA +I V IGG K L+ P I T G
Sbjct: 353 IASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPG 389
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 74.1 bits (174), Expect = 2e-14
Identities = 40/114 (35%), Positives = 64/114 (56%)
Frame = +2
Query: 401 RKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPI 580
RK+F D+G+ L+ +K L PT IQ + IL G N + A+TG GKT A+ PI
Sbjct: 6 RKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPI 65
Query: 581 IQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGG 742
I+ +W ++ + A+++TP RELA+QI E + ++N+ ++GG
Sbjct: 66 IE---KW----SKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGG 112
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 72.1 bits (169), Expect = 1e-13
Identities = 37/99 (37%), Positives = 55/99 (55%)
Frame = +2
Query: 404 KTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPII 583
KTF D L L + + F PT++Q++ +P L G + V A TG GKT AYL PI+
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 584 QHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTI 700
+ +L+ K I E A+++ P RELA Q+ V + +
Sbjct: 74 ELLLKQK-QIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 72.1 bits (169), Expect = 1e-13
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Frame = +2
Query: 377 KKEETPVYRKT-FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCG 553
K E+ R T FED LK L+ + + GF P+ IQ +++P L+G + + A+ G G
Sbjct: 34 KTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTG 93
Query: 554 KTLAYLXPIIQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTL 733
KT A++ P ++ + K IQ +++ P RELALQ +V +T+ + +N+ V
Sbjct: 94 KTAAFVIPSLEKVDTKKSKIQ-------TLILVPTRELALQTSQVCKTLGKHMNVKVMVT 146
Query: 734 IGG 742
GG
Sbjct: 147 TGG 149
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 71.3 bits (167), Expect = 2e-13
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Frame = +2
Query: 365 GNANKKEETPVYRKTFEDIGLKDNLVKVVKD-LGFTLPTAIQTKAVPAILN--GHNTVIT 535
G + P+ F + L L + + + + PTAIQ+ +PA+LN + I
Sbjct: 125 GTTKEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIE 184
Query: 536 AETGCGKTLAYLXPIIQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQ--- 706
A+TG GKTLAYL PI+Q ++ + + AV++ P REL QI VA +
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPL 244
Query: 707 SININVTTLIGGKRKKN 757
S I +IGG++KK+
Sbjct: 245 SHWIVSCNVIGGEKKKS 261
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 65.7 bits (153), Expect = 9e-12
Identities = 33/112 (29%), Positives = 62/112 (55%)
Frame = +2
Query: 407 TFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQ 586
+FE++ LK++L++ + G+ P+A+Q++A+ I G + + A++G GKT + I+Q
Sbjct: 22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ 81
Query: 587 HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGG 742
+I A++++P RELA+QI V + +N+ IGG
Sbjct: 82 -------SIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGG 126
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 64.9 bits (151), Expect = 1e-11
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Frame = +2
Query: 359 IHGNANKKEETPVYRKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAIL-NGHNTVIT 535
I N+ K + P E L + GF T +Q + + + N N V+
Sbjct: 25 IRWNSTMKSQQPTLFS--EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQ 82
Query: 536 AETGCGKTLAYLXPIIQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSIN 715
A+TG GKTLA+L + +L+ KP + + +V+++P RELALQI E A+ +
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNS--SKIHSVILSPTRELALQIFEEARKLTYGTG 140
Query: 716 INVTTLIGGKRK 751
I V+ IGG K
Sbjct: 141 IRVSYAIGGNSK 152
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 63.3 bits (147), Expect = 5e-11
Identities = 37/115 (32%), Positives = 61/115 (53%)
Frame = +2
Query: 410 FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQH 589
F ++ L +K+ F T IQ + +P+ L G + + A+TG GKTLA++ P+I++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 590 ILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGGKRKK 754
+ K T + A+VI+P RELA+Q E I + + + +IGG K
Sbjct: 101 LYRKKWTSLDGLG---ALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYK 152
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 62.9 bits (146), Expect = 6e-11
Identities = 35/112 (31%), Positives = 57/112 (50%)
Frame = +2
Query: 407 TFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQ 586
TF+D+ LK L++ + GF P+AIQ +A+ IL + + A++G GKT + ++Q
Sbjct: 20 TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ 79
Query: 587 HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGG 742
I A+++ P RELA QI +V + +N+ IGG
Sbjct: 80 -------KIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 60.1 bits (139), Expect = 4e-10
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Frame = +2
Query: 425 LKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQHILEWK 604
L ++ + GF+ P IQ+ +P G + + A+TG GKTLA+ PI++H L
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR-- 186
Query: 605 PTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGGKR-KKNVXXLQLSP 781
+ ++ A+V+ P RELA QI + + I S NI V ++ GG +K L P
Sbjct: 187 -NVDAKYVQ--ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHP 243
Query: 782 *XXITTLG 805
+ T G
Sbjct: 244 HVVVATPG 251
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 59.7 bits (138), Expect = 6e-10
Identities = 35/114 (30%), Positives = 61/114 (53%)
Frame = +2
Query: 410 FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQH 589
F+++ + L + +K+ + PT IQ P +L G + V AETG GKT+A+ P +Q+
Sbjct: 169 FDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 590 ILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGGKRK 751
+ + + + P +V++P RELA+Q E ++ Q N+ + GG K
Sbjct: 227 L----NGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPK 276
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 56.0 bits (129), Expect = 7e-09
Identities = 37/114 (32%), Positives = 55/114 (48%)
Frame = +2
Query: 407 TFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQ 586
+F+ I + L V GF T +Q A+P L + V+ A TG GKTLAYL P
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 587 HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGGKR 748
+ + T + A+++ P RELA QI V + + + +L GGK+
Sbjct: 62 KVTR-RDTDETGLG---ALIVAPTRELATQIFNVTKEL---LAYQPDSLDGGKK 108
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 53.6 bits (123), Expect = 4e-08
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Frame = +2
Query: 404 KTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNG--HNTVITAETGCGKTLAYLXP 577
K+FE++ LK L+K + + F P+ IQ KA+P +L+ N + +++G GKT A+
Sbjct: 114 KSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALT 173
Query: 578 IIQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEV 688
++ + P P A+ + P+RELA QI +V
Sbjct: 174 MLSRVDASVP-------KPQAICLAPSRELARQIMDV 203
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 52.0 bits (119), Expect = 1e-07
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Frame = +2
Query: 425 LKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQHILEWK 604
L +L++ +K G+T PT +Q ++P + +G + + A+TG GKT +L PI+ +
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKG 235
Query: 605 PT---IQEEFNS--------PLAVVITPNRELALQIGEVAQTIAQSININVTTLIGG 742
P + ++ P +++ P REL QI E ++ + + GG
Sbjct: 236 PAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGG 292
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 48.4 bits (110), Expect = 1e-06
Identities = 32/105 (30%), Positives = 50/105 (47%)
Frame = +2
Query: 437 LVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQHILEWKPTIQ 616
L + +K T T IQ A+P I + + + A TG GKT+AYL PI+Q + P
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP--- 113
Query: 617 EEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGGKRK 751
A+++ P REL QI A+ ++ ++ + L K
Sbjct: 114 ---GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEK 155
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 41.9 bits (94), Expect = 1e-04
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Frame = +2
Query: 410 FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILN----------GHNTVITAETGCGKT 559
F + + LV+ ++ T A+Q +P +L G + ++A TG GKT
Sbjct: 128 FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKT 187
Query: 560 LAYLXPIIQHIL-EWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLI 736
L+Y+ PI+Q + P ++ VVI P REL +Q+ + + + V
Sbjct: 188 LSYVIPIVQCLSHRTVPRLR-------CVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWT 240
Query: 737 GGK 745
G K
Sbjct: 241 GQK 243
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 35.1 bits (77), Expect = 0.014
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 485 QTKAVPAILNGHNTVITAETGCGKTLAYLXPIIQHILE 598
Q A+ + NG + +++ T GK+L Y PI+Q +LE
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLE 353
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -1
Query: 415 FKSLPI-HGCFFFFICIPVY 359
F S PI H FFFF+C+ V+
Sbjct: 147 FSSFPILHFLFFFFLCVCVF 166
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 491 KAVPAILNGHNTVITAETGCGKTLAYLXPIIQHIL 595
K + AI + VI+ ETG GK+ + I+ H L
Sbjct: 585 KIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYL 619
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 503 AILNGHNTVITAETGCGKTLAYLXP-IIQHILEWKPTIQEEFNSPLAVVITPNRELALQI 679
++LN N + TG GK+L++L P +I+ + + L +++ +++ L++
Sbjct: 1202 SLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLRV 1261
Query: 680 GE 685
E
Sbjct: 1262 NE 1263
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 464 FTLPTAIQT--KAVPAILNGHNTVITAETGCGKTLAYLXPIIQHILEWKPTIQE 619
F LP ++ + V I + NT++ TG GKTL + +I+ LE + IQE
Sbjct: 6 FLLPQLLRKYQQDVYNIASKQNTLLVMRTGAGKTLLAV-KLIKQKLEEQILIQE 58
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 503 AILNGHNTVITAETGCGKTLAYLXP-IIQHILEWKPTIQEEFNSPLAVVITPNRELALQI 679
++LN N + TG GK+L++L P +I+ + + L +++ +++ L++
Sbjct: 1202 SLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLRV 1261
Query: 680 GE 685
E
Sbjct: 1262 NE 1263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,383
Number of Sequences: 5004
Number of extensions: 66265
Number of successful extensions: 184
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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