Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_I20
(913 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC053863-1|AAH53863.1| 709|Homo sapiens YTH domain containing 1... 42 0.004
BC041119-1|AAH41119.1| 727|Homo sapiens YTH domain containing 1... 42 0.004
AK056430-1|BAB71181.1| 658|Homo sapiens protein ( Homo sapiens ... 42 0.004
AC074378-1|AAY41024.1| 658|Homo sapiens unknown protein. 42 0.004
AB075846-1|BAB85552.1| 480|Homo sapiens KIAA1966 protein protein. 42 0.004
EF064742-1|ABK41925.1| 273|Homo sapiens chemokine (C-X-C motif)... 36 0.15
BC044930-1|AAH44930.1| 273|Homo sapiens chemokine (C-X-C motif)... 36 0.15
BC017588-1|AAH17588.1| 273|Homo sapiens CXCL16 protein protein. 36 0.15
AY358909-1|AAQ89268.1| 254|Homo sapiens CXCL16 protein. 36 0.15
AK027389-1|BAB55078.1| 273|Homo sapiens protein ( Homo sapiens ... 36 0.15
AF337812-1|AAK38275.1| 254|Homo sapiens chemokine CXCL16 protein. 36 0.15
AF301016-1|AAG34365.1| 273|Homo sapiens transmembrane chemokine... 36 0.15
AF275260-1|AAG31750.1| 254|Homo sapiens SRPSOX protein. 36 0.15
>BC053863-1|AAH53863.1| 709|Homo sapiens YTH domain containing 1
protein.
Length = 709
Score = 41.5 bits (93), Expect = 0.004
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +2
Query: 488 DYMTKLNYLFRDTRFFLIKSNNAENITLS 574
D +KL Y+ +D RFFLIKSNN EN++L+
Sbjct: 325 DQTSKLKYVLQDARFFLIKSNNHENVSLA 353
>BC041119-1|AAH41119.1| 727|Homo sapiens YTH domain containing 1
protein.
Length = 727
Score = 41.5 bits (93), Expect = 0.004
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +2
Query: 488 DYMTKLNYLFRDTRFFLIKSNNAENITLS 574
D +KL Y+ +D RFFLIKSNN EN++L+
Sbjct: 343 DQTSKLKYVLQDARFFLIKSNNHENVSLA 371
>AK056430-1|BAB71181.1| 658|Homo sapiens protein ( Homo sapiens
cDNA FLJ31868 fis, clone NT2RP7001962, highly similar to
Rattus norvegicus YT521 mRNA for RNA splicing-related
protein. ).
Length = 658
Score = 41.5 bits (93), Expect = 0.004
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +2
Query: 488 DYMTKLNYLFRDTRFFLIKSNNAENITLS 574
D +KL Y+ +D RFFLIKSNN EN++L+
Sbjct: 274 DQTSKLKYVLQDARFFLIKSNNHENVSLA 302
>AC074378-1|AAY41024.1| 658|Homo sapiens unknown protein.
Length = 658
Score = 41.5 bits (93), Expect = 0.004
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +2
Query: 488 DYMTKLNYLFRDTRFFLIKSNNAENITLS 574
D +KL Y+ +D RFFLIKSNN EN++L+
Sbjct: 274 DQTSKLKYVLQDARFFLIKSNNHENVSLA 302
>AB075846-1|BAB85552.1| 480|Homo sapiens KIAA1966 protein protein.
Length = 480
Score = 41.5 bits (93), Expect = 0.004
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +2
Query: 488 DYMTKLNYLFRDTRFFLIKSNNAENITLS 574
D +KL Y+ +D RFFLIKSNN EN++L+
Sbjct: 96 DQTSKLKYVLQDARFFLIKSNNHENVSLA 124
>EF064742-1|ABK41925.1| 273|Homo sapiens chemokine (C-X-C motif)
ligand 16 protein.
Length = 273
Score = 36.3 bits (80), Expect = 0.15
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 548 SILSGKIVCLETSSSILSYNRRFSHLLCYGHTCAFFLQANDFWTWNVCGSHDFPWI 381
S GK + ++ S+ NR HL Y H C ++ + +W+VCG + PW+
Sbjct: 56 SCYCGKRISSDSPPSVQFMNRLRKHLRAY-HRCLYYTRFQ-LLSWSVCGGNKDPWV 109
>BC044930-1|AAH44930.1| 273|Homo sapiens chemokine (C-X-C motif)
ligand 16 protein.
Length = 273
Score = 36.3 bits (80), Expect = 0.15
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 548 SILSGKIVCLETSSSILSYNRRFSHLLCYGHTCAFFLQANDFWTWNVCGSHDFPWI 381
S GK + ++ S+ NR HL Y H C ++ + +W+VCG + PW+
Sbjct: 56 SCYCGKRISSDSPPSVQFMNRLRKHLRAY-HRCLYYTRFQ-LLSWSVCGGNKDPWV 109
>BC017588-1|AAH17588.1| 273|Homo sapiens CXCL16 protein protein.
Length = 273
Score = 36.3 bits (80), Expect = 0.15
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 548 SILSGKIVCLETSSSILSYNRRFSHLLCYGHTCAFFLQANDFWTWNVCGSHDFPWI 381
S GK + ++ S+ NR HL Y H C ++ + +W+VCG + PW+
Sbjct: 56 SCYCGKRISSDSPPSVQFMNRLRKHLRAY-HRCLYYTRFQ-LLSWSVCGGNKDPWV 109
>AY358909-1|AAQ89268.1| 254|Homo sapiens CXCL16 protein.
Length = 254
Score = 36.3 bits (80), Expect = 0.15
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 548 SILSGKIVCLETSSSILSYNRRFSHLLCYGHTCAFFLQANDFWTWNVCGSHDFPWI 381
S GK + ++ S+ NR HL Y H C ++ + +W+VCG + PW+
Sbjct: 37 SCYCGKRISSDSPPSVQFMNRLRKHLRAY-HRCLYYTRFQ-LLSWSVCGGNKDPWV 90
>AK027389-1|BAB55078.1| 273|Homo sapiens protein ( Homo sapiens
cDNA FLJ14483 fis, clone MAMMA1002461. ).
Length = 273
Score = 36.3 bits (80), Expect = 0.15
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 548 SILSGKIVCLETSSSILSYNRRFSHLLCYGHTCAFFLQANDFWTWNVCGSHDFPWI 381
S GK + ++ S+ NR HL Y H C ++ + +W+VCG + PW+
Sbjct: 56 SCYCGKRISSDSPPSVQFMNRLRKHLRAY-HRCLYYTRFQ-LLSWSVCGGNKDPWV 109
>AF337812-1|AAK38275.1| 254|Homo sapiens chemokine CXCL16 protein.
Length = 254
Score = 36.3 bits (80), Expect = 0.15
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 548 SILSGKIVCLETSSSILSYNRRFSHLLCYGHTCAFFLQANDFWTWNVCGSHDFPWI 381
S GK + ++ S+ NR HL Y H C ++ + +W+VCG + PW+
Sbjct: 37 SCYCGKRISSDSPPSVQFMNRLRKHLRAY-HRCLYYTRFQ-LLSWSVCGGNKDPWV 90
>AF301016-1|AAG34365.1| 273|Homo sapiens transmembrane chemokine
CXCL16 protein.
Length = 273
Score = 36.3 bits (80), Expect = 0.15
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 548 SILSGKIVCLETSSSILSYNRRFSHLLCYGHTCAFFLQANDFWTWNVCGSHDFPWI 381
S GK + ++ S+ NR HL Y H C ++ + +W+VCG + PW+
Sbjct: 56 SCYCGKRISSDSPPSVQFMNRLRKHLRAY-HRCLYYTRFQ-LLSWSVCGGNKDPWV 109
>AF275260-1|AAG31750.1| 254|Homo sapiens SRPSOX protein.
Length = 254
Score = 36.3 bits (80), Expect = 0.15
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 548 SILSGKIVCLETSSSILSYNRRFSHLLCYGHTCAFFLQANDFWTWNVCGSHDFPWI 381
S GK + ++ S+ NR HL Y H C ++ + +W+VCG + PW+
Sbjct: 37 SCYCGKRISSDSPPSVQFMNRLRKHLRAY-HRCLYYTRFQ-LLSWSVCGGNKDPWV 90
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,985,747
Number of Sequences: 237096
Number of extensions: 1135846
Number of successful extensions: 1816
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1816
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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