Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I20
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   5.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 437 QANDFWTWNVCGSHDFPWI*CWQNLCLVNLIHL 339
           +A   W  + C S  F W  C   L + NLI L
Sbjct: 74  KAAGHWVIHPCSSFRFYWDLCMLLLLVANLIIL 106


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 437 QANDFWTWNVCGSHDFPWI*CWQNLCLVNLIHL 339
           +A   W  + C S  F W  C   L + NLI L
Sbjct: 74  KAAGHWVIHPCSSFRFYWDLCMLLLLVANLIIL 106


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 437 QANDFWTWNVCGSHDFPWI*CWQNLCLVNLIHL 339
           +A   W  + C S  F W  C   L + NLI L
Sbjct: 74  KAAGHWVIHPCSSFRFYWDLCMLLLLVANLIIL 106


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +1

Query: 13  YCLTTTGXPFXLLVVNQLVSLYLYCFLLI 99
           +C+T T   F L ++   +++ +Y F+++
Sbjct: 78  HCMTITFASFLLFILLVQIAVAVYAFIVV 106


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 46  LLVVNQLVSLYLYCFLLILQ-CGLI 117
           L+VV  LVS+ +Y   +ILQ  GL+
Sbjct: 404 LIVVIALVSIIMYIAFIILQYAGLL 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,422
Number of Sequences: 438
Number of extensions: 2646
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)