Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I16
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    34   0.032
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    31   0.23 
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    29   0.69 
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    26   8.5  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   8.5  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   8.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
 Frame = -3

Query: 720 NVPKVERIRCPVTE*TSPRRPSTPITIAFCANKLTNAVLQLVEYILVQKAS-PLLTQQLL 544
           ++P       PVT    P   STP+T   C    +      V Y      S PL T    
Sbjct: 398 SIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTS------VPYTSTPVTSTPLATTNCT 451

Query: 543 GITNV--TRSPSTSLDTTTVECFSVNSIP 463
             T+V  T +P TS   TT  C +  SIP
Sbjct: 452 TSTSVPYTSTPVTSTPLTTTNCTTSTSIP 480


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 21/86 (24%), Positives = 41/86 (47%)
 Frame = +2

Query: 353 VDIPVWDYVNDPEISDEIDSLQTSLGCCGSNSYMDYVGMEFTEKHSTVVVSKEVDGDLVT 532
           +++P+   ++D EI+   D++  S G C       YVG +   K     +SK   G+ VT
Sbjct: 383 IEVPI---MHDYEINQIFDAISYSKGSCVIRMVSKYVGEDTFIKGIQKYISKHRYGNTVT 439

Query: 533 LVIPSSCCVSNGDAFCTRMYSTSCKT 610
             + ++    +G    + M++ + KT
Sbjct: 440 EDLWAALSAESGQDISSTMHNWTKKT 465


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = -3

Query: 483 FSVNSIPT*SI*ELLPQQPSEVCRLSISSLI---SGSFT*SHTGMSTYFMIRFESIVKAR 313
           FS N+ PT S  +L P   S +  L+ S+L    SGS+  S  G  +   I   + +   
Sbjct: 165 FSSNASPTDS--QLSPTHTSTIAELAASTLSIFPSGSYAGSTFGSPSRSSIDSSTYLPRS 222

Query: 312 ITMVSFISRIKARTKAYFQTGTSYCFAA 229
            ++ S  S   ART A  Q+  S  F A
Sbjct: 223 KSVNSLSSNFSARTPASNQSSVSEDFGA 250


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 177 ERFLSLNT*IPPPLGPVLPQSSKTFRF 257
           +RF +++T IPP +   +P S K ++F
Sbjct: 470 DRFSAIHTGIPPAVDYPIPDSQKAWQF 496


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -3

Query: 807 ADSSAARAIIIVLEFSKPSAPSRFSFYECNVPKVERIRCPVTE*TSPRRP 658
           +D      + +V + S P  PS  S    NV     I CP     S +RP
Sbjct: 331 SDGIPTDLLSLVSKISLPPVPSNSSSQRSNVSLNSLIECPYKSMMSRKRP 380


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 834 VSDVNV--LSFADSSAARAIIIVLEFSKPSAPSRFSFYECNVPKVERIRCPVTE*TSPRR 661
           VSD  V  +SFA++ ++R++I     SKPS  +   F     P V +    VT  +   +
Sbjct: 644 VSDTAVPSMSFANNISSRSVISAATDSKPSTRTSPPFVNNTKPIVAKSPVTVTASSETNK 703

Query: 660 PSTPI 646
            S  I
Sbjct: 704 KSQKI 708


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,273
Number of Sequences: 5004
Number of extensions: 62027
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)