Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I16
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    31   0.011
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 31.5 bits (68), Expect = 0.011
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 335 NLIMKYVDIPVWDYVNDPEISDEIDSLQTSLGCCGSNSYMDY 460
           N+  KY +I    ++N  E  D ID +Q +L CCG +S  DY
Sbjct: 114 NISEKYQEIFNGYFLNS-ESKDFIDFIQKNLQCCGVHSLSDY 154


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 213 PLGPVLPQSSKTFR 254
           P GPV+P+ S T++
Sbjct: 652 PYGPVIPEQSLTYQ 665


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 539 IPSSCCVSNGDAFCTRMYSTSCKTAL 616
           +P    V N  A CT++YST   T L
Sbjct: 209 LPQLQLVKNYTADCTQVYSTGNFTCL 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,955
Number of Sequences: 438
Number of extensions: 4357
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)