Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I12
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    30   0.40 
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   1.2  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    28   1.6  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    27   5.0  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    27   5.0  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   6.6  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   6.6  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   8.7  

>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -3

Query: 568 RTKGFFDSSLSLVRLLRGYRNGESTFKISSKSVEVMIFS 452
           +T+G F S + L  LL+ Y NG  T+K S K+V V++ S
Sbjct: 678 QTEGTFTSKVILTDLLKCYSNG--TYKASFKNVHVVLRS 714


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -3

Query: 490 KISSKSVEVMIF---SKLSKLLSG*VNFIYFNYFCKYIFRINSSNFFRTNGKKSFIIRVP 320
           KI+SK   V +    ++ S LLSG  + + F  F KYI  +N   +    G  S+  R+ 
Sbjct: 54  KINSKGFTVYVLDATTRRSALLSGKHDTMIFTLFVKYITSLNHPEYLLLGG-YSYGARIS 112

Query: 319 IKFKIWILVERPLT 278
           +   I + +++ ++
Sbjct: 113 MHKSITLAIDKRIS 126


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 338 TFLPIGSKEIGTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGDFEST 499
           ++  I  + +  + PK+I  K++K +K +   E L +  K   FD+   + E T
Sbjct: 601 SYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKSQAFDKLLQESEVT 654


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 152 SGNKRKNDESSIKCG---FNVRHASLSNLQHNNNTNKNDKS 39
           +   + ND    KC     N+++   SNL+ N N+ KN ++
Sbjct: 303 TATNKMNDGPITKCARETINIKNLKTSNLERNQNSPKNKRT 343


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 176 NNYLHANGSGNKRK---NDESSIKCGFNVRHASLSNLQHNNNTNKN 48
           N++L  + + +K+K   N +    C FN R  +L N     +TNKN
Sbjct: 227 NSFLEGDSATHKKKKTDNIKEFTSCEFNDRSRTLLNYAGYMDTNKN 272


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 608 LWTEEADAPGQGPKN*GV 555
           LWT+   APG+GP   GV
Sbjct: 362 LWTDPQPAPGRGPSKRGV 379


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +2

Query: 317 YWDPDNKTF-------LPIGSKEIGTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDR 475
           YW PDNK         L I  ++  T     + T + +++K N P + +  F    +FD+
Sbjct: 544 YW-PDNKDHALCLEGGLRISVQKYETFEDLKVNTHLFRLDKPNGPPKYIHHFWVHTWFDK 602

Query: 476 FRGDFES 496
              D ES
Sbjct: 603 THPDIES 609


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 386 NIFTKVVKINKINSPREQLAEFRKDHY---FDRFRGDFE 493
           N F K   + +I S    ++EF+K  Y   FD F+  F+
Sbjct: 163 NFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFK 201


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 226 WSHTSWNTFRE*KRNNLTIIFTPTAVVIRERTMKVLSNVDSMLDTQVFQI 77
           W  T    FR   RN+  +   PT      RTM  + +    L  +V+QI
Sbjct: 91  WQKTGSELFRLHDRNDREMCLAPTHEEDVTRTMATIIDSQKQLPIRVYQI 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,081
Number of Sequences: 5004
Number of extensions: 52906
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)