Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I12
         (927 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.42 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.56 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   5.2  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   5.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 143 KRKNDESSIKCGFNVRHASLSNLQHNNNTNKND 45
           +R ++ S+I  G    +AS +N  +NNN N N+
Sbjct: 220 QRNSNNSTITAGNANTNASNNNNNNNNNNNNNN 252


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -2

Query: 173 NYLHANGSGNKRKNDESSIKCGFNVRHASLSNLQHNNN 60
           N+ H     + + +++++ +      H+S SN +HNNN
Sbjct: 426 NHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNNRHNNN 463


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = -2

Query: 164 HANGSGNKRKNDESSIKCGFNVRHASLSNLQHNNNTNKND 45
           H   +GN+  +++++     N ++A   N    N   +ND
Sbjct: 423 HNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQND 462


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 535 LVRLLRGYRNGESTFKISSKSVEV 464
           +++LLR ++NG   F +  K +E+
Sbjct: 72  IMKLLRTFKNGNFDFDMIVKQLEI 95


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 146 NKRKNDESSIKCGFNVRHASLSNLQHNNNTNKNDK 42
           NK  ++ ++ K  +N  + + +N  +NNN N N K
Sbjct: 320 NKTIHNNNNYK--YNYNNNNYNNNNYNNNYNNNCK 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,975
Number of Sequences: 438
Number of extensions: 4232
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)