Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I09
         (960 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    31   0.93 
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    31   0.93 
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    30   2.8  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    30   2.8  

>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical protein
            F46F11.9b protein.
          Length = 1282

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 494  VLTRTIPGSVGSTALSSWISLGGALVPTCWSCP 396
            ++ R +P S G T   SW++   ++ P  W CP
Sbjct: 1050 IVARLVPLSQGETIKESWLTTTTSVTPPKWPCP 1082


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical protein
            F46F11.9a protein.
          Length = 1280

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 494  VLTRTIPGSVGSTALSSWISLGGALVPTCWSCP 396
            ++ R +P S G T   SW++   ++ P  W CP
Sbjct: 1048 IVARLVPLSQGETIKESWLTTTTSVTPPKWPCP 1080


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 455 ALSSWISLGGALVPTCWSCPITKILSGTFMSNF 357
           A SS +S GGA      + P+T  L+G + SNF
Sbjct: 5   AASSIVSYGGAATSNFLTTPVTPFLAGFYNSNF 37


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 455 ALSSWISLGGALVPTCWSCPITKILSGTFMSNF 357
           A SS +S GGA      + P+T  L+G + SNF
Sbjct: 5   AASSIVSYGGAATSNFLTTPVTPFLAGFYNSNF 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,876,655
Number of Sequences: 27780
Number of extensions: 392177
Number of successful extensions: 844
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)