Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_I06
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0142 - 940421-940701,941262-941574 31 0.80
09_02_0495 + 9880714-9881196 31 1.4
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 29 3.2
07_03_1136 + 24218601-24218734,24218769-24219906 29 4.3
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 29 4.3
08_02_0971 - 23151055-23151930,23152024-23152290 29 5.7
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 7.5
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 28 7.5
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 9.9
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 9.9
07_01_0479 + 3606663-3607448 28 9.9
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 31.5 bits (68), Expect = 0.80
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +3
Query: 600 GVFXPPXXXXXKKRGPPXGGXXPPGGXXXXXGGGPPXXXP 719
G + PP + G P G PP G GG PP P
Sbjct: 59 GAYPPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPPAGYP 98
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 704 GXPPXGXXXPPXGXPPPXGGXP 639
G PP G PP PPP G P
Sbjct: 34 GYPPQGYPPPPGAYPPPPGAYP 55
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 598 GGFXPPPXGXXXKKGXPPXGGGXPXGGXXXPXGGXP 705
G + PPP G P G P G P GG P
Sbjct: 52 GAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYP 87
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -3
Query: 698 PPXGXXXPPXGX-PPPXGGXPFFXXXPXGGG 609
PP G PP G PPP G P P GG
Sbjct: 49 PPPGAYPPPPGAYPPPPGAYPPQHGYPQPGG 79
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 601 GFXPPPXGXXXKKGXPPXGGGXPXGGXXXPXGGXPXXXXP 720
G PPP G + P GG P G GG P P
Sbjct: 59 GAYPPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPPAGYP 98
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 698 PPXGXXXPPXGXPPPXGGXPFFXXXPXGGG 609
PP G PP G PP G P P GG
Sbjct: 56 PPPGAYPPPPGAYPPQHGYPQPGGYPPPGG 85
>09_02_0495 + 9880714-9881196
Length = 160
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 598 GGFXPPPXGXXXKKGXPPXGGGXPXGGXXXP 690
G + PPP G PP GGG P G P
Sbjct: 77 GTYPPPPPGVMPGAFAPPFGGGFPYGPAPPP 107
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = -1
Query: 772 PXPPXXXXKKX--GGGXKKXGXXXGGP-PPXXXXXPPGGXXPPXGG 644
P PP GGG G GG PP PG PP GG
Sbjct: 52 PPPPAGSSSSSSSGGGDGGAGGLFGGTYPPPPPGVMPGAFAPPFGG 97
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 700 PPPXXXXXPPGGXXPPXGGPLFFXXXXXGGXKTPP 596
PP P GG PP GG F GG TPP
Sbjct: 392 PPAAGTTPPAGGFTPPAGG---FGTPPLGGFGTPP 423
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 610 PPPXGXXXKKGXPPXGGGXPXGGXXXPXGG 699
PP G G PP GGG G P GG
Sbjct: 160 PPGGGRGGALGRPPGGGGGGGGPGRAPGGG 189
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1
Query: 595 RGGFXPPPXGXXXKKGXPPXGGGXPXGGXXXPXGGXPXXXXP 720
RGG P P ++G P GGG GG P P P
Sbjct: 29 RGG--PNPNNSYHRRGPPGGGGGDRRGGFQLPPDAAPPPPPP 68
>08_02_0971 - 23151055-23151930,23152024-23152290
Length = 380
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 716 PPFFXPPPXFFXXXXXGGGXFFFFG 790
PPF PPP FF G FF G
Sbjct: 128 PPFPPPPPPFFAPRHFAAGAFFRHG 152
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Frame = +3
Query: 612 PPXXXXXKKRGP-PXGGXXPPGGXXXXXGGGPP----XXXPXFFXPPP 740
PP R P P G PP G GGGPP P PPP
Sbjct: 353 PPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPPP 400
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/65 (27%), Positives = 21/65 (32%)
Frame = -1
Query: 790 PKKKKXPXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGPLFFXXXXXGG 611
P+ K P P GG + PPP PP P G P GG
Sbjct: 245 PEANKPPAAPGTLPNGSGGPPRPPPPQV--PPPPPQAPPPPPPNAPMGMPPRIPPPPVGG 302
Query: 610 XKTPP 596
+ PP
Sbjct: 303 TQPPP 307
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -1
Query: 706 GGPPPXXXXXPPGGXXPPXGGPLFFXXXXXGGXK 605
G PPP PGG PP P GG K
Sbjct: 622 GAPPPPPPPGKPGGPPPPPPRPGSLPRNLAGGDK 655
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -1
Query: 706 GGPPPXXXXXPPGGXXPPXGGPLFFXXXXXGGXK 605
G PPP PGG PP P GG K
Sbjct: 927 GAPPPPPPPGKPGGPPPPPPPPGSLPRNLAGGDK 960
>07_01_0479 + 3606663-3607448
Length = 261
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Frame = +3
Query: 612 PPXXXXXKKRGP--PXGGXXPPGGXXXXXGGGPPXXXPXFFXPPP 740
PP R P P PPG GG PP P PPP
Sbjct: 170 PPGQMPPPMRPPQMPIPFQRPPGVPPAFPGGPPPPPGPFMRGPPP 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,711,536
Number of Sequences: 37544
Number of extensions: 438222
Number of successful extensions: 797
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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