Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I06
         (799 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46389-1|CAA86523.1|  380|Homo sapiens vasodilator-stimulated ph...    35   0.30 
X98534-1|CAA67147.2|  378|Homo sapiens vasodilator-stimulated ph...    35   0.30 
BC038224-1|AAH38224.1|  380|Homo sapiens vasodilator-stimulated ...    35   0.30 
BC026019-1|AAH26019.1|  380|Homo sapiens vasodilator-stimulated ...    35   0.30 
X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    32   2.1  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               32   2.1  
BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.        32   2.1  
BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.        32   2.1  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    32   2.1  
BC085004-1|AAH85004.1|  710|Homo sapiens KHSRP protein protein.        31   3.6  
U94832-1|AAB53222.1|  711|Homo sapiens KSRP protein.                   31   4.8  
AF093747-1|AAD29861.1|  115|Homo sapiens KH type splicing regula...    31   4.8  

>Z46389-1|CAA86523.1|  380|Homo sapiens vasodilator-stimulated
           phosphoprotein (VASP) protein.
          Length = 380

 Score = 35.1 bits (77), Expect = 0.30
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -1

Query: 787 KKKKXPXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           +K++ P P     ++            GGPPP     PP G  PP G P
Sbjct: 141 QKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLP 189



 Score = 30.7 bits (66), Expect = 6.4
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = -3

Query: 797 VGXQKKKNXXPPXXXXKKXXGGXKKXGXXXXGXPPXGXXXPPXGXPPPXGGXP 639
           V  QK++   P     ++             G PP     PP G PPP G  P
Sbjct: 138 VEQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPP 190



 Score = 30.3 bits (65), Expect = 8.4
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 698 PPXGXXXPPXGXPPPXGGXPFFXXXPXG 615
           PP G   PP G PPP G  P     P G
Sbjct: 165 PPAGGPPPPPGPPPPPGPPPPPGLPPSG 192


>X98534-1|CAA67147.2|  378|Homo sapiens vasodilator-stimulated
           phosphoprotein protein.
          Length = 378

 Score = 35.1 bits (77), Expect = 0.30
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -1

Query: 787 KKKKXPXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           +K++ P P     ++            GGPPP     PP G  PP G P
Sbjct: 139 QKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLP 187



 Score = 30.7 bits (66), Expect = 6.4
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = -3

Query: 797 VGXQKKKNXXPPXXXXKKXXGGXKKXGXXXXGXPPXGXXXPPXGXPPPXGGXP 639
           V  QK++   P     ++             G PP     PP G PPP G  P
Sbjct: 136 VEQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPP 188



 Score = 30.3 bits (65), Expect = 8.4
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 698 PPXGXXXPPXGXPPPXGGXPFFXXXPXG 615
           PP G   PP G PPP G  P     P G
Sbjct: 163 PPAGGPPPPPGPPPPPGPPPPPGLPPSG 190


>BC038224-1|AAH38224.1|  380|Homo sapiens vasodilator-stimulated
           phosphoprotein protein.
          Length = 380

 Score = 35.1 bits (77), Expect = 0.30
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -1

Query: 787 KKKKXPXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           +K++ P P     ++            GGPPP     PP G  PP G P
Sbjct: 141 QKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLP 189



 Score = 30.7 bits (66), Expect = 6.4
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = -3

Query: 797 VGXQKKKNXXPPXXXXKKXXGGXKKXGXXXXGXPPXGXXXPPXGXPPPXGGXP 639
           V  QK++   P     ++             G PP     PP G PPP G  P
Sbjct: 138 VEQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPP 190



 Score = 30.3 bits (65), Expect = 8.4
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 698 PPXGXXXPPXGXPPPXGGXPFFXXXPXG 615
           PP G   PP G PPP G  P     P G
Sbjct: 165 PPAGGPPPPPGPPPPPGPPPPPGLPPSG 192


>BC026019-1|AAH26019.1|  380|Homo sapiens vasodilator-stimulated
           phosphoprotein protein.
          Length = 380

 Score = 35.1 bits (77), Expect = 0.30
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -1

Query: 787 KKKKXPXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           +K++ P P     ++            GGPPP     PP G  PP G P
Sbjct: 142 QKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLP 190



 Score = 30.7 bits (66), Expect = 6.4
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = -3

Query: 797 VGXQKKKNXXPPXXXXKKXXGGXKKXGXXXXGXPPXGXXXPPXGXPPPXGGXP 639
           V  QK++   P     ++             G PP     PP G PPP G  P
Sbjct: 139 VEQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPP 191



 Score = 30.3 bits (65), Expect = 8.4
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 698 PPXGXXXPPXGXPPPXGGXPFFXXXPXG 615
           PP G   PP G PPP G  P     P G
Sbjct: 166 PPAGGPPPPPGPPPPPGPPPPPGLPPSG 193


>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -1

Query: 790 PKKKKXPXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           P +   P PP     +  G         G PPP     PP G  PP  GP
Sbjct: 267 PNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGP 316


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -1

Query: 790 PKKKKXPXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           P +   P PP     +  G         G PPP     PP G  PP  GP
Sbjct: 267 PNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGP 316


>BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.
          Length = 478

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -1

Query: 790 PKKKKXPXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           P +   P PP     +  G         G PPP     PP G  PP  GP
Sbjct: 194 PNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGP 243


>BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.
          Length = 588

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -1

Query: 790 PKKKKXPXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           P +   P PP     +  G         G PPP     PP G  PP  GP
Sbjct: 304 PNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGP 353


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -1

Query: 790 PKKKKXPXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           P +   P PP     +  G         G PPP     PP G  PP  GP
Sbjct: 267 PNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGP 316


>BC085004-1|AAH85004.1|  710|Homo sapiens KHSRP protein protein.
          Length = 710

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = -1

Query: 766 PPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGPLFFXXXXXGGXKTPP 596
           PP       GGG    G   G PP        GG  P  GGP        GG   PP
Sbjct: 9   PPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGP---GGGSAGGPSQPP 62


>U94832-1|AAB53222.1|  711|Homo sapiens KSRP protein.
          Length = 711

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = -1

Query: 766 PPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGPLFFXXXXXGGXKTPP 596
           PP       GGG    G   G PP        GG  P  GGP        GG   PP
Sbjct: 9   PPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPCGGGP---GGGSAGGPSQPP 62


>AF093747-1|AAD29861.1|  115|Homo sapiens KH type splicing
           regulatory protein protein.
          Length = 115

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = -1

Query: 766 PPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGPLFFXXXXXGGXKTPP 596
           PP       GGG    G   G PP        GG  P  GGP        GG   PP
Sbjct: 9   PPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPCGGGP---GGGSAGGPSQPP 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,162,610
Number of Sequences: 237096
Number of extensions: 2724071
Number of successful extensions: 6290
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5202
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)