Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I06
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    40   0.003
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    33   0.24 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    32   0.55 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    32   0.55 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    32   0.55 
U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.2  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.2  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.2  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    28   8.9  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      28   8.9  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    28   8.9  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +3

Query: 600 GVFXPPXXXXXKKRGP--PXG-GXXPPGGXXXXXGGGPPXXXPXFFXPPP 740
           G F PP       +GP  P G G  PPGG       GPP   P  F PPP
Sbjct: 388 GAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPP 437



 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -1

Query: 736 GGXKKXGXXXG-GPPPXXXXXPPGGXXPPXGGPLFFXXXXXGG 611
           G  +  G   G GPPP      PG   PP GGP  F     GG
Sbjct: 398 GAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGG 440



 Score = 32.3 bits (70), Expect = 0.41
 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = +1

Query: 598 GGFXPPPXGXXXKKG--XPPXGGGXPXGGXXXPXGGXPXXXXPXFFXPP 738
           GG+ PPP G     G   PP GG  P G    P GG      P    PP
Sbjct: 407 GGYGPPPPGGPGAPGSYGPPQGG--PGGFGPPPPGGPGAYGPPPTGFPP 453



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
 Frame = +3

Query: 645 PPXGGXXPPGGXXXXXGGG-----PPXXXPXFFXPPPXFF 749
           PP GG   PG      GG      PP   P  + PPP  F
Sbjct: 412 PPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGF 451


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 633  KKRGPPXGGXXPPGGXXXXXGGGPP 707
            + RGPP GG  PP G      GGPP
Sbjct: 1550 QNRGPPMGGLPPPHGGMNGWRGGPP 1574



 Score = 31.9 bits (69), Expect = 0.55
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 704  GXPPXGXXXPPXGXPPPXGGXP 639
            G PP     PP G PPP GG P
Sbjct: 1590 GGPPPRLGMPPPGPPPPNGGPP 1611



 Score = 31.5 bits (68), Expect = 0.72
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +1

Query: 595  RGGFXPPPXGXXXKKGXPPXGGGXPXGGXXXPXGGXPXXXXP 720
            RGG  PPP G    +G PP  GG P      P G  P    P
Sbjct: 1570 RGG-PPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGP 1610



 Score = 31.1 bits (67), Expect = 0.96
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -3

Query: 704  GXPPX--GXXXPPXGXPPPXGGXPFFXXXPXGGGK 606
            G PP   G   P  G PP  GG P F   P G G+
Sbjct: 1480 GMPPPMRGGGPPMRGGPPMRGGPPMFRGGPPGPGR 1514



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = -3

Query: 698  PPXGXXXPPXGXPPP--XGGXPFFXXXPXGGG 609
            PP G   P  G PPP   GG P     P  GG
Sbjct: 1470 PPRGMNSPMRGMPPPMRGGGPPMRGGPPMRGG 1501


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +3

Query: 612 PPXXXXXKKRGPPXGGXXPPGGXXXXXGGGPPXXXPXFFXPPP 740
           PP        GPP     PPGG     GG PP   P    PPP
Sbjct: 731 PPGGLPPITGGPPP--PPPPGGLPPISGGPPPPPPPPGGCPPP 771



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = -1

Query: 772 PXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           P PP        GG        GG PP     PPGG     GGP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF---KGGP 784


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +3

Query: 612 PPXXXXXKKRGPPXGGXXPPGGXXXXXGGGPPXXXPXFFXPPP 740
           PP        GPP     PPGG     GG PP   P    PPP
Sbjct: 731 PPGGLPPITGGPPP--PPPPGGLPPISGGPPPPPPPPGGCPPP 771



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = -1

Query: 772 PXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           P PP        GG        GG PP     PPGG     GGP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF---KGGP 784


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +3

Query: 612 PPXXXXXKKRGPPXGGXXPPGGXXXXXGGGPPXXXPXFFXPPP 740
           PP        GPP     PPGG     GG PP   P    PPP
Sbjct: 314 PPGGLPPITGGPPP--PPPPGGLPPISGGPPPPPPPPGGCPPP 354



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = -1

Query: 772 PXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           P PP        GG        GG PP     PPGG     GGP
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF---KGGP 367


>U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical
           protein F41F3.3 protein.
          Length = 156

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +1

Query: 598 GGFXPPPXGXXXKKGXPPXGGGXPXGGXXXPXGGXP 705
           GG+   P G     G  P GGG P GG     G  P
Sbjct: 112 GGYGGAPIGGGSYAGAGPIGGGAPIGGGAGYAGAAP 147


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = -1

Query: 772 PXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGPLFFXXXXXGGXKTPP 596
           P PP       G G        G PPP     PP    PP G P        GG   PP
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP---PPPTGSP---PPPPAGGSPPPP 292



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
 Frame = +3

Query: 633 KKRGPPXGGXXPPG---GXXXXXGGGPPXXXPXFFXPPP 740
           K++ PP G   PP    G     G G P   P    PPP
Sbjct: 228 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPP 266


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = -1

Query: 772 PXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGPLFFXXXXXGGXKTPP 596
           P PP       G G        G PPP     PP    PP G P        GG   PP
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP---PPPTGSP---PPPPAGGSPPPP 313



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
 Frame = +3

Query: 633 KKRGPPXGGXXPPG---GXXXXXGGGPPXXXPXFFXPPP 740
           K++ PP G   PP    G     G G P   P    PPP
Sbjct: 249 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPP 287


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = -1

Query: 772 PXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGPLFFXXXXXGGXKTPP 596
           P PP       G G        G PPP     PP    PP G P        GG   PP
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP---PPPTGSP---PPPPAGGSPPPP 298



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
 Frame = +3

Query: 633 KKRGPPXGGXXPPG---GXXXXXGGGPPXXXPXFFXPPP 740
           K++ PP G   PP    G     G G P   P    PPP
Sbjct: 234 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPP 272


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
 Frame = +2

Query: 479 GDPPXPIXGXXPDPXKKXGNFSPRXXXXXXXXXXX-VXXKGGGFXPPPXXXXKKKGXPXG 655
           GD P P+      P     +  PR            +  +GG   PPP       G P G
Sbjct: 745 GDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804

Query: 656 GXGXPXGXXXXXXGGXPXXXPPFFXPP 736
           G G          G  P   PP   PP
Sbjct: 805 GGGMYPPLIPTRPG--PGGPPPNMAPP 829


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
 Frame = +2

Query: 479 GDPPXPIXGXXPDPXKKXGNFSPRXXXXXXXXXXX-VXXKGGGFXPPPXXXXKKKGXPXG 655
           GD P P+      P     +  PR            +  +GG   PPP       G P G
Sbjct: 745 GDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804

Query: 656 GXGXPXGXXXXXXGGXPXXXPPFFXPP 736
           G G          G  P   PP   PP
Sbjct: 805 GGGMYPPLIPTRPG--PGGPPPNMAPP 829


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = +3

Query: 600 GVFXPPXXXXXKKRGPPXGGXXPPGGXXXXXGGGPPXXXPXFFXPPPXFF 749
           G   P        +GPP G   PP        G PP      F PP   F
Sbjct: 80  GPSGPSGPPVYHNQGPPRGYPPPPPQGADTWRGAPPPAHHGHFGPPGHHF 129


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -1

Query: 772 PXPPXXXXKKXGGGXKKXGXXXGGPPPXXXXXPPGGXXPPXGGP 641
           P PP    +   GG  + G   G P P      PGG   P GGP
Sbjct: 257 PGPPGPPGQDGSGGAAQPGPP-GPPGPPGNDGQPGGPGQP-GGP 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,635,221
Number of Sequences: 27780
Number of extensions: 330749
Number of successful extensions: 967
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)