Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I02
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.35 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.61 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   3.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
           PPP P       P P        PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -1

Query: 729 PPXXRXXXXXXXPTPXXXXXXGXPPPPPP 643
           PP          P P      G PPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 693 PTPXXXXXXGXPPPPPP 643
           P P      G PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPP 766


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 16/60 (26%), Positives = 16/60 (26%)
 Frame = -3

Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPPXXXXXXXXXXXXXXXGRXNXKKKXPPPXXGG 551
           PPP P         P        PPPPPP                R       PPP   G
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect(2) = 3.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 693 PTPXXXXXXGXPPPPPP 643
           P+       G PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPP 311



 Score = 21.8 bits (44), Expect(2) = 3.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 660 PPPPPPXXXXXFF 622
           PPPPPP     F+
Sbjct: 307 PPPPPPPPSNDFW 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,247
Number of Sequences: 5004
Number of extensions: 16536
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)