Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_I02
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 31 0.85
01_03_0005 + 11568545-11569119,11569179-11569191 31 1.5
07_01_0080 + 587674-588510 30 2.0
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.0
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 30 2.6
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 29 3.4
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 29 4.5
12_01_0016 + 125052-127145 29 6.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.0
04_04_0057 + 22410167-22411330 28 7.9
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 7.9
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 28 7.9
01_05_0490 + 22672241-22674679 28 7.9
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 31.5 bits (68), Expect = 0.85
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P + PPPPPP
Sbjct: 351 PPPPPPPPPPPPPPPKLNTAPKPPPPPPP 379
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P PPPPPP
Sbjct: 350 PPPPPPPPPPPPPPPPKLNTAPKPPPPPP 378
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Frame = -1
Query: 660 PPPPPPXXXXX-------FFFFXGXGGGGXXTKKKXTPPPXXGGG 547
PPPPPP + G GGGG T +PPP GG
Sbjct: 56 PPPPPPVVTPTPQCPPPPSYPSGGGGGGGGGTVMYTSPPPPYSGG 100
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -1
Query: 654 PPPPXXXXXFFFFXGXGGGGXXTKKKXTPPPXXGGG 547
PPPP G GGGG PPP GGG
Sbjct: 70 PPPPSYPSG----GGGGGGGGTVMYTSPPPPYSGGG 101
>07_01_0080 + 587674-588510
Length = 278
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P PPPPPP
Sbjct: 92 PPPPPPPPSSGSPPPPPPPPPPPPPPPPP 120
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P PPPPPP
Sbjct: 93 PPPPPPPSSGSPPPPPPPPPPPPPPPPPP 121
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 742 IFFXPPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
+F PPP P P PPPPPP
Sbjct: 87 MFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPPP 119
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/60 (28%), Positives = 17/60 (28%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPPXXXXXXXXXXXXXXXGRXNXKKKXPPPXXGG 551
PPP P P P PPPPPP PPP GG
Sbjct: 314 PPPPPPKPAAAAP-PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P PPPPPP
Sbjct: 354 PPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P PPPPPP
Sbjct: 119 PPPPPPPHPPEDPPPHPPHPPDHPPPPPP 147
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -1
Query: 660 PPPPPPXXXXXFFFFXGXGGGGXXTKKKXTPPPXXGG 550
PPPPPP + G GGG K PP GG
Sbjct: 125 PPPPPPKPKPCECTYCGGHGGGC---NKPAVPPCAGG 158
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 727 PPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PP P K P P PPPPPP
Sbjct: 80 PPPPQKPDKVSPPPAQKPSKVSPPPPPP 107
>12_01_0016 + 125052-127145
Length = 697
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 657 PPPPPXXXXXFFFFXGXGGGGXXT 586
PPPPP FFF G G G T
Sbjct: 17 PPPPPRLVLVPFFFSGSGSGTNNT 40
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -3
Query: 739 FFXPPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
F PPP P P PPPPPP
Sbjct: 561 FSPPPPPPPPPPPPLPQSNYASSQPPPPPPPP 592
>04_04_0057 + 22410167-22411330
Length = 387
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P + PPPPP
Sbjct: 184 PPPPPPAAAAASPSPERSPRCQPSPPPPP 212
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P R PPPPPP
Sbjct: 353 PPPPPPPPPPPPPPPPPPP--RPPPPPPP 379
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -3
Query: 736 FXPPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
+ PPP P + P P PPPPP
Sbjct: 109 YRPPPPPRKKPQFQPPPQPPRAWDPSPPPPP 139
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P + P PPPPPP
Sbjct: 642 PPPPPPTTRRSRKPPQPPSRPAPPPPPPP 670
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,400,949
Number of Sequences: 37544
Number of extensions: 406286
Number of successful extensions: 6531
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5421
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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