Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_I02
(828 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 26 0.25
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.3
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 3.1
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 28 7.1
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 7.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 9.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 9.4
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 28 9.4
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 25.8 bits (54), Expect(2) = 0.25
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 693 PTPXXXXXXGXPPPPPP 643
P P G PPPPPP
Sbjct: 540 PPPPVGMANGGPPPPPP 556
Score = 25.8 bits (54), Expect(2) = 0.25
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 666 GXPPPPPPXXXXXFFF 619
G PPPPPP F F
Sbjct: 574 GGPPPPPPPPPPSFMF 589
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P PPPPPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P + PPPPP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P PPPPPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P + PPPPP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P PPPPPP
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P + PPPPP
Sbjct: 343 PPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 727 PPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PP P P P + PPPPPP
Sbjct: 467 PPPPSRIPNPSPSPQPAEVSKSPPPPPP 494
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 727 PPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PP P P P + PPPPPP
Sbjct: 474 PPPPSRIPNPSPSPQPAEVSKSPPPPPP 501
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -3
Query: 748 IYIFFXPPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
+++ F PP P P PPPPPP
Sbjct: 781 VHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPP 815
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -3
Query: 748 IYIFFXPPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
+++ F PP P P PPPPPP
Sbjct: 781 VHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPP 815
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -1
Query: 729 PPXXRXXXXXXXPTPXXXXXXGXPPPPPP 643
PP + P P G PPPPPP
Sbjct: 566 PPLPQNLSGAPPPPPPPPPMLGGPPPPPP 594
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPP 647
PPP P P P PPPPP
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPP 291
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPP 647
PPP P P P PPPPP
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPP 301
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -3
Query: 730 PPPXPXXXXKXXPYPXXXXXXRXPPPPPP 644
PPP P P P PPPPP
Sbjct: 548 PPPPPREPTPREPTPEPEPVREPTPPPPP 576
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,174,070
Number of Sequences: 27780
Number of extensions: 195921
Number of successful extensions: 1905
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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