Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_I01
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   7.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 772 PPPPPPXKXXXPPPP 728
           PPPPP      PPPP
Sbjct: 764 PPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 772 PPPPPPXKXXXPPPPXXLGGXXFF 701
           PPPPPP     PPP    GG  ++
Sbjct: 775 PPPPPP-----PPPAVSAGGSRYY 793



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 772 PPPPPPXKXXXPPPP 728
           PPPPPP      PPP
Sbjct: 763 PPPPPPGVAGAGPPP 777


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 772 PPPPPPXKXXXPPPPXXLGGXXFFF 698
           PPPPPP      P    LG   + F
Sbjct: 372 PPPPPPELLNHSPKSRPLGDKPYLF 396


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = -1

Query: 772 PPPPPPX--KXXXPPPPXXLG 716
           PPPPPP       PPPP   G
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,562
Number of Sequences: 5004
Number of extensions: 25198
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)