Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_I01
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 33 0.18
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.32
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.32
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.32
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 33 0.32
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 0.75
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 31 1.3
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 1.7
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 1.7
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 30 1.7
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 30 1.7
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 1.7
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical ... 30 1.7
AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical ... 30 1.7
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 29 3.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 4.0
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 29 5.3
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 29 5.3
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 29 5.3
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 5.3
Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical pr... 28 7.0
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 28 7.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 7.0
AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAue... 28 7.0
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 28 7.0
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 28 7.0
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 28 7.0
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 9.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 9.2
AL023844-8|CAA19534.1| 396|Caenorhabditis elegans Hypothetical ... 28 9.2
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPPXXLG 716
PPPPPP PPPP LG
Sbjct: 87 PPPPPPPTLKAPPPPPILG 105
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.32
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPPXXLGG 713
PPPPPP PPPP GG
Sbjct: 760 PPPPPPGGCPPPPPPPPPGG 779
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 758 PPPPPPPPGGCPPPP 772
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 759 PPPPPPPGGCPPPPP 773
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.32
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPPXXLGG 713
PPPPPP PPPP GG
Sbjct: 760 PPPPPPGGCPPPPPPPPPGG 779
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 758 PPPPPPPPGGCPPPP 772
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 759 PPPPPPPGGCPPPPP 773
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.32
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPPXXLGG 713
PPPPPP PPPP GG
Sbjct: 343 PPPPPPGGCPPPPPPPPPGG 362
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 341 PPPPPPPPGGCPPPP 355
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 342 PPPPPPPGGCPPPPP 356
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 32.7 bits (71), Expect = 0.32
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPPXXLGG 713
PPPPPP PPPP GG
Sbjct: 579 PPPPPPMLGGPPPPPPPPGG 598
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 578 PPPPPPPMLGGPPPP 592
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPPXXLGG 713
PPPPP PPPP +GG
Sbjct: 84 PPPPPMFAGGIPPPPPMMGG 103
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 769 PPPPPXKXXXPPPPXXLG 716
PPPPP PPPP G
Sbjct: 95 PPPPPMMGGIPPPPPMFG 112
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPPXXLG 716
PPPPPP PPPP G
Sbjct: 95 PPPPPPHYYTQPPPPPQSG 113
>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
protein K02E2.2 protein.
Length = 1021
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 784 FFXXPPPPPPXKXXXPPPP 728
FF P PPPP PPPP
Sbjct: 780 FFALPVPPPPPVPPPPPPP 798
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = -1
Query: 811 FVGXXGGGXFFXX---PPPPPPXKXXXPPPPXXLGG 713
+ G GGG + PPPPPP P P GG
Sbjct: 286 YAGSSGGGGYSAPAAAPPPPPPPPPPPAPAPVSSGG 321
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = -1
Query: 811 FVGXXGGGXFFXX---PPPPPPXKXXXPPPPXXLGG 713
+ G GGG + PPPPPP P P GG
Sbjct: 286 YAGSSGGGGYSAPAAAPPPPPPPPPPPAPAPVSSGG 321
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 132 PPPPPPPPHYPPPPP 146
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 64 PPPPPPPPPMCPPPP 78
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 65 PPPPPPPPMCPPPPP 79
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 66 PPPPPPPMCPPPPPP 80
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 796 GGGXFFXXPPPPPPXKXXXPPPP 728
G F PPPPP + PPPP
Sbjct: 12 GDNRFRKQPPPPPSPRRAPPPPP 34
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 72 PPPPPPPMPCPPPPP 86
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 73 PPPPPPMPCPPPPPP 87
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 2 PPPPPPPPPPPPPPP 16
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 3 PPPPPPPPPPPPPPP 17
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 2 PPPPPPPPPPPPPPP 16
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 3 PPPPPPPPPPPPPPP 17
>AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.2 protein.
Length = 381
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 184 PPPPPPIPPPGPPPP 198
>AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.3 protein.
Length = 381
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP PPPP
Sbjct: 184 PPPPPPIPPPGPPPP 198
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 793 GGXFFXXPPPPPPXKXXXPPPPXXL 719
G + PPPPP PPPP L
Sbjct: 127 GPQYIEAPPPPPSPPPPPPPPPPQL 151
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 796 GGGXFFXXPPPPPPXKXXXPPPPXXLGG 713
G G PPPP PPPP GG
Sbjct: 763 GAGPMSSFPPPPRGGMHHMPPPPSFRGG 790
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 796 GGGXFFXXPPPPPPXKXXXPPPPXXLG 716
G G + PPP P PPPP +G
Sbjct: 45 GAGVGYAPPPPRPYGATYAPPPPMGIG 71
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
P PPPP K PPPP
Sbjct: 296 PIPPPPIKEESPPPP 310
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
P PPPP K PPPP
Sbjct: 296 PIPPPPIKEESPPPP 310
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Frame = -1
Query: 805 GXXGGGXFFXXP---PPPPPXKXXXPPPP 728
G GGG P PPPPP PPPP
Sbjct: 26 GGGGGGCAPAAPACAPPPPPMCGCAPPPP 54
>Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical
protein W01G7.1 protein.
Length = 627
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPPXXLGGXXF 704
PPPPPP P P LG F
Sbjct: 519 PPPPPPKPKPAPVQPISLGNINF 541
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 805 GXXGGGXFFXXPPPPPPXKXXXPPPPXXLGG 713
G GG PPPPPP P PP GG
Sbjct: 759 GMRGGPVGVGVPPPPPP-PSAIPLPPRLQGG 788
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPP 728
PPPPPP + PPP
Sbjct: 138 PPPPPPPRVPRTPPP 152
>AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAuer
Formation DAF-5,a Ski oncogene homolog involved in a
neuronal TGF betapathway (71.0 kD) (daf-5) protein.
Length = 627
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 772 PPPPPPXKXXXPPPPXXLGGXXF 704
PPPPPP P P LG F
Sbjct: 519 PPPPPPKPKPAPVQPISLGNINF 541
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 796 GGGXFFXXPPPPPPXKXXXPPPP 728
G G PPPPP PPPP
Sbjct: 56 GEGNASRRPPPPPKGTGTPPPPP 78
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 796 GGGXFFXXPPPPPPXKXXXPPPP 728
G G PPPPP PPPP
Sbjct: 119 GEGNASRRPPPPPKGTGSPPPPP 141
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 796 GGGXFFXXPPPPPPXKXXXPPPP 728
G G PPPPP PPPP
Sbjct: 150 GEGNASRRPPPPPKGTGSPPPPP 172
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 796 GGGXFFXXPPPPPPXKXXXPPPP 728
G G PPPPP PPPP
Sbjct: 243 GEGNASRRPPPPPKGTGSPPPPP 265
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 805 GXXGGGXFFXXPPPPPPXKXXXPPPPXXLGG 713
G GGG PPPPP PPP GG
Sbjct: 23 GGGGGGCGCGAPPPPPA---CAPPPAPACGG 50
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 805 GXXGGGXFFXXPPPPPPXKXXXPPPPXXLGG 713
G GG PPPPPP P PP GG
Sbjct: 759 GMRGGPVGVGVPPPPPP-PSAIPLPPRLQGG 788
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 781 FXXPPPPPPXKXXXPPPP 728
F PPPPPP K P P
Sbjct: 321 FILPPPPPPMKLDPSPQP 338
>Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical
protein F46F2.3 protein.
Length = 137
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 796 GGGXFFXXPPPPPPXKXXXPP 734
GGG + PPPPPP P
Sbjct: 109 GGGAYAQAPPPPPPSSYASGP 129
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 769 PPPPPXKXXXPPPP 728
PPPPP PPPP
Sbjct: 287 PPPPPSSGMWPPPP 300
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 769 PPPPPXKXXXPPPP 728
PPPPP PPPP
Sbjct: 297 PPPPPSSGMWPPPP 310
>AL023844-8|CAA19534.1| 396|Caenorhabditis elegans Hypothetical
protein Y48A6B.13 protein.
Length = 396
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 766 PPPPXKXXXPPPPXXLGG 713
PPPP + PPPP + G
Sbjct: 314 PPPPTQKAPPPPPTRMNG 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,965,053
Number of Sequences: 27780
Number of extensions: 204405
Number of successful extensions: 2035
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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