Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H23
         (969 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   4.0  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    26   9.2  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    26   9.2  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 462 DPRALPQQNAHHLIPNRYYLPLHLDFLRQHHRRRRPIFVLLEF 334
           +P     Q +  L    Y+LP++ DF+R+  ++ RP  + + F
Sbjct: 515 NPNIATIQTSKGLADKVYFLPVNADFVRKVIKQERPDSIYVTF 557


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 426 NDEHFAEVTREDQNGDADSQENGDSDSDTXI 518
           ND+  AE   +D++     +EN D+D +T +
Sbjct: 28  NDKKIAEELPQDEDDYEQEEENEDADQNTSV 58


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 426 NDEHFAEVT-REDQNGDADSQENGDSDSD 509
           N++  AE + +ED+NGDA  +  G ++ D
Sbjct: 185 NEKSAAETSIKEDKNGDAAKKNEGSANQD 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,723
Number of Sequences: 5004
Number of extensions: 35322
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)