Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H23
         (969 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    30   2.4  
07_03_1547 + 27623945-27625612                                         30   3.2  
03_04_0133 + 17585278-17585282,17586257-17586386,17587444-175875...    28   9.7  

>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 243 TAIETTPGDENDDNWLYGDSGGDANQESTEETQE 344
           T   +  G+++DD W   DSG +  +E  ++ +E
Sbjct: 34  TPTPSDDGEDSDDGWAVSDSGSEEEEEEYDDEEE 67


>07_03_1547 + 27623945-27625612
          Length = 555

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 438 NAHHLIPNRYYLPLHLDFLRQHHRRRRPIFVLLEFPQW 325
           N +H   N   LPL   F+  +H RRR +FV+LE+  W
Sbjct: 225 NVYHEF-NDGILPL---FVTSNHLRRRVVFVILEYHDW 258


>03_04_0133 +
           17585278-17585282,17586257-17586386,17587444-17587591,
           17587661-17587849,17587999-17589150,17589303-17589466
          Length = 595

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 489 SLGYQRHHFDPRALPQQNAHHLIPNRYYLPLHLDFLRQHHRRRRPIFV 346
           SLG    HF PRALP + +  L+   YY  + +   R    R  P+ V
Sbjct: 381 SLGKNFWHFLPRALPGKTSMELV--SYYFNVFMLRKRAQQNRSEPLHV 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,521,746
Number of Sequences: 37544
Number of extensions: 210911
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)