Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H22
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   159   7e-40
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   159   7e-40
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    47   4e-06
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   6.5  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.6  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   8.6  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   8.6  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  159 bits (385), Expect = 7e-40
 Identities = 70/84 (83%), Positives = 80/84 (95%)
 Frame = +2

Query: 221 RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVN 400
           RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN
Sbjct: 47  RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106

Query: 401 NKGEMKGSAITGPVAKECADLWPR 472
            KGEMKGSAITGPVAKECADLWPR
Sbjct: 107 PKGEMKGSAITGPVAKECADLWPR 130



 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 20/32 (62%), Positives = 28/32 (87%)
 Frame = +3

Query: 87  RGRGGSAGAKFRISLGLPVGAVINCADNTGXK 182
           RGRG ++G K+R++LGLPV A++NCADN+G K
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAK 34


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  159 bits (385), Expect = 7e-40
 Identities = 70/84 (83%), Positives = 80/84 (95%)
 Frame = +2

Query: 221 RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVN 400
           RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN
Sbjct: 47  RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106

Query: 401 NKGEMKGSAITGPVAKECADLWPR 472
            KGEMKGSAITGPVAKECADLWPR
Sbjct: 107 PKGEMKGSAITGPVAKECADLWPR 130



 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 20/32 (62%), Positives = 28/32 (87%)
 Frame = +3

Query: 87  RGRGGSAGAKFRISLGLPVGAVINCADNTGXK 182
           RGRG ++G K+R++LGLPV A++NCADN+G K
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAK 34


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
 Frame = +2

Query: 242 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 394
           A  GD +V  VKK +            R  +  A+++R + P RR DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 395 VNNKGEMKGSAITGPVAKE 451
           VN + E  G+ I   VA E
Sbjct: 91  VNKECEPLGTRILSVVANE 109


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 275 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 385
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 423 EPFISPLLLTMTPALSSKYINTPS 352
           +P+  P+L +  P L   Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -2

Query: 465  HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 313
            + + H    GP++   ++  L     P  +S Y+N  +  L+GF+ ++  A
Sbjct: 963  YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 471 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 334
           R H+ AH+       AEP ++P++   + P+++    +TPS L   F
Sbjct: 60  RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,374
Number of Sequences: 5004
Number of extensions: 56997
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)