Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_H22
(919 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 173 1e-42
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 172 1e-42
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 172 1e-42
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 172 1e-42
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 172 1e-42
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 172 1e-42
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 172 1e-42
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 172 1e-42
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 73 2e-12
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 173 bits (420), Expect = 1e-42
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +2
Query: 206 KVIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 385
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 386 GVIVNNKGEMKGSAITGPVAKECADLWPR 472
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.5 bits (170), Expect = 2e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 78 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXK 182
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 172 bits (419), Expect = 1e-42
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +2
Query: 206 KVIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 385
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 386 GVIVNNKGEMKGSAITGPVAKECADLWPR 472
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.5 bits (170), Expect = 2e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 78 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXK 182
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 172 bits (419), Expect = 1e-42
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +2
Query: 206 KVIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 385
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 386 GVIVNNKGEMKGSAITGPVAKECADLWPR 472
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.5 bits (170), Expect = 2e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 78 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXK 182
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 172 bits (419), Expect = 1e-42
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +2
Query: 206 KVIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 385
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 386 GVIVNNKGEMKGSAITGPVAKECADLWPR 472
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.5 bits (170), Expect = 2e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 78 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXK 182
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 172 bits (419), Expect = 1e-42
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +2
Query: 206 KVIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 385
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 386 GVIVNNKGEMKGSAITGPVAKECADLWPR 472
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.5 bits (170), Expect = 2e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 78 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXK 182
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 172 bits (419), Expect = 1e-42
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +2
Query: 206 KVIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 385
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 386 GVIVNNKGEMKGSAITGPVAKECADLWPR 472
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.5 bits (170), Expect = 2e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 78 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXK 182
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 172 bits (419), Expect = 1e-42
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +2
Query: 206 KVIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 385
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 37 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 96
Query: 386 GVIVNNKGEMKGSAITGPVAKECADLWPR 472
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 97 GVIVNNKGEMKGSAITGPVAKECADLWPR 125
Score = 60.5 bits (140), Expect = 8e-09
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +3
Query: 96 GGSAGAKFRISLGLPVGAVINCADNTGXK 182
GGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 GGSSGAKFRISLGLPVGAVINCADNTGAK 29
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 172 bits (419), Expect = 1e-42
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +2
Query: 206 KVIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 385
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 386 GVIVNNKGEMKGSAITGPVAKECADLWPR 472
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.5 bits (170), Expect = 2e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 78 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXK 182
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 72.5 bits (170), Expect = 2e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 78 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXK 182
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
Score = 62.9 bits (146), Expect = 2e-09
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +2
Query: 206 KVIKGRLNRLPAAGSGDMIVATVKKGKPELRKK 304
K IKGRLNRLPAAG GDM++ATVKKGKPELRKK
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKK 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,234,175
Number of Sequences: 237096
Number of extensions: 2255760
Number of successful extensions: 4437
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4437
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11936890730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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