Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H22
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   163   2e-40
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    32   0.66 
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    32   0.66 
Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical pr...    29   3.5  
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    29   3.5  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  163 bits (396), Expect = 2e-40
 Identities = 75/87 (86%), Positives = 80/87 (91%)
 Frame = +2

Query: 212 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 391
           I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104

Query: 392 IVNNKGEMKGSAITGPVAKECADLWPR 472
           IVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 31/35 (88%), Positives = 34/35 (97%)
 Frame = +3

Query: 78  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXK 182
           MSKRGRGG++GAKFRISLGLPVGAV+NCADNTG K
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAK 35


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 498 LEYTFKISNCVSLSFPSTSKSNPKNYNLRNXHL-QCKCAKLDXTFM 632
           LE  F ++N  +   PSTS S+P N N R   L +C     D T M
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 490


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 498 LEYTFKISNCVSLSFPSTSKSNPKNYNLRNXHL-QCKCAKLDXTFM 632
           LE  F ++N  +   PSTS S+P N N R   L +C     D T M
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 490


>Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical
           protein F52B5.5b protein.
          Length = 197

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 510 FKISNCVSLSFPSTSKSNPKNYNLRNXHL-QCKCAKLDXTFM 632
           F ++N  +   PSTS S+P N N R   L +C     D T M
Sbjct: 2   FNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 43


>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defective
            protein 45 protein.
          Length = 1076

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -1

Query: 259  HVPGTGRRQSVQ--ATFDNLGQRSHT-DSLXPVLSAQLITAPTGRPREIRNFAPAEPPRP 89
            H  G GRR+     A  DN  +R+   +SL P  +  +   PT  PRE R     EP  P
Sbjct: 847  HNDGRGRREMENSVAMQDNDWRRNPPRESLPPRETRPMRDGPTREPREFRGDRDREPREP 906

Query: 88   LLDI 77
              ++
Sbjct: 907  FREV 910


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 529 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 398
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,394,738
Number of Sequences: 27780
Number of extensions: 334850
Number of successful extensions: 836
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)