Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_H21
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 40 4e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.003
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 24 1.7
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 2.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 24 4.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 24 4.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 24 4.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 6.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.3
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 40.3 bits (90), Expect = 4e-04
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -1
Query: 652 PPPPPPPXFXXXXXXPPPPPP 590
PPPPPPP F PPPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 36.7 bits (81), Expect = 0.004
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -1
Query: 652 PPPPPPPXFXXXXXXPPPPPP 590
PPPPPPP PPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = -2
Query: 648 PPPPPXXXXXXXXXPPPPPXXXXFFXXXKXK 556
PPPPP PPPP + K K
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.5 bits (83), Expect = 0.003
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -1
Query: 652 PPPPPPPXFXXXXXXPPPPPP 590
PPPPPPP PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782
Score = 36.7 bits (81), Expect = 0.004
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -1
Query: 652 PPPPPPPXFXXXXXXPPPPPP 590
PPPPPPP PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Score = 33.5 bits (73), Expect = 0.041
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 652 PPPPPPPXFXXXXXXPPPPPP 590
PPPPPP PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 652 PPPPPPPXFXXXXXXPPPPPP 590
P P PPP PPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.8 bits (49), Expect(2) = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 652 PPPPPPP 632
PPPPPPP
Sbjct: 306 PPPPPPP 312
Score = 23.8 bits (49), Expect(2) = 3.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 652 PPPPPPP 632
PPPPPPP
Sbjct: 307 PPPPPPP 313
Score = 22.6 bits (46), Expect(2) = 1.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 607 PPPPPPXXXFF 575
PPPPPP F+
Sbjct: 309 PPPPPPSNDFW 319
Score = 21.4 bits (43), Expect(2) = 3.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 607 PPPPPPXXXFFF 572
PPPPPP F+
Sbjct: 308 PPPPPPPSNDFW 319
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 24.6 bits (51), Expect(2) = 2.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 667 KXKXXPPPPPPP 632
K PPPPPPP
Sbjct: 1090 KPSAVPPPPPPP 1101
Score = 21.0 bits (42), Expect(2) = 2.7
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 607 PPPPPP 590
PPPPPP
Sbjct: 1097 PPPPPP 1102
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 652 PPPPPPPXFXXXXXXPPPP 596
PPPPPPP P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPP 355
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 10/34 (29%)
Frame = -1
Query: 661 KXXPPPPPPPXFXXXXXXP----------PPPPP 590
K PPPPPPP P PPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Frame = -1
Query: 652 PPPPPP--------PXFXXXXXXPPPPPP 590
PPPPPP P PPPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 651 PPPPPPXXXXXXXXXPPP 598
PPPPPP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.8 bits (49), Expect(2) = 4.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 652 PPPPPPP 632
PPPPPPP
Sbjct: 945 PPPPPPP 951
Score = 21.0 bits (42), Expect(2) = 4.3
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 607 PPPPPP 590
PPPPPP
Sbjct: 948 PPPPPP 953
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.8 bits (49), Expect(2) = 4.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 652 PPPPPPP 632
PPPPPPP
Sbjct: 189 PPPPPPP 195
Score = 21.0 bits (42), Expect(2) = 4.4
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 607 PPPPPP 590
PPPPPP
Sbjct: 192 PPPPPP 197
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.8 bits (49), Expect(2) = 4.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 652 PPPPPPP 632
PPPPPPP
Sbjct: 370 PPPPPPP 376
Score = 21.0 bits (42), Expect(2) = 4.7
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 607 PPPPPP 590
PPPPPP
Sbjct: 372 PPPPPP 377
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -2
Query: 666 KXKXXPPPPPPXXXXXXXXXPPPPP 592
K + P PP P PPPPP
Sbjct: 724 KPQVTPAPPTPAPTPAVKHHPPPPP 748
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Frame = -1
Query: 652 PPP---PPPPXFXXXXXXPP--PPPP 590
PPP PPPP PP PPPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 652 PPPPPPPXFXXXXXXPPPPPP 590
PPP PP PPPP P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,763
Number of Sequences: 5004
Number of extensions: 17731
Number of successful extensions: 312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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