Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H20
         (965 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.3  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   5.2  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   5.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXP 727
           PPPPPP  G      PP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXP 727
           PPPPPP    G    PP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXP 727
           PPPPP   G G    PP P
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXP 727
           PPPPPP  G      PP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 103 VPQRNSTXFKIXFKGDFPP*LRWRVW 26
           VP++++   ++ F GD    L W++W
Sbjct: 618 VPRKDNKRIRVTFNGDVAGNLSWKLW 643


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 103 VPQRNSTXFKIXFKGDFPP*LRWRVW 26
           VP++++   ++ F GD    L W++W
Sbjct: 618 VPRKDNKRIRVTFNGDVAGNLSWKLW 643


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,119
Number of Sequences: 5004
Number of extensions: 21355
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)